RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	KMT5A	Q9NQR1	393 aa		13.83	□□□□□ -0.2
SHMT2-223	ENST00000556689	DDX19A	Q9NUU7	478 aa	Known RBP	13.83	□□□□□ -0.2
SHMT2-223	ENST00000556689	LRWD1	Q9UFC0	647 aa		13.83	□□□□□ -0.2
SHMT2-223	ENST00000556689	PCDHB8	Q9UN66	801 aa		13.83	□□□□□ -0.2
SHMT2-223	ENST00000556689	DNM3	Q9UQ16	869 aa		13.83	□□□□□ -0.2
SHMT2-223	ENST00000556689	STK24	Q9Y6E0	443 aa		13.83	□□□□□ -0.2
SHMT2-223	ENST00000556689	CACNA1B	Q00975	2339 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	SLC38A8	A6NNN8	435 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689		K7ESF4	209 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	PAPSS2	O95340	614 aa	Predicted RBP	13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	PROZ	P22891	400 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	FXR2	P51116	673 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	EPHB3	P54753	998 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	YWHAH	Q04917	246 aa	Predicted RBP	13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	SRSF5	Q13243	272 aa	Known RBP	13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	PLD1	Q13393	1074 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	SLC10A6	Q3KNW5	377 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	DGKK	Q5KSL6	1271 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	TAS1R3	Q7RTX0	852 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	ZBTB45	Q96K62	511 aa	Predicted RBP	13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	C17orf75	Q9HAS0	396 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	RBM12	Q9NTZ6	932 aa	Known RBP	13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	ARHGAP28	Q9P2N2	729 aa		13.82	□□□□□ -0.2
SHMT2-223	ENST00000556689	F5	P12259	2224 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689		A0A1W2PRU2	124 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	MYBPHL	A2RUH7	354 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	ABLIM1	O14639	778 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	GDF9	O60383	454 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	HIP1R	O75146	1068 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	OAZ2	O95190	189 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	HARS	P12081	509 aa	Known RBP	13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	ALDH1A3	P47895	512 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	SOX9	P48436	509 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	FCHO2	Q0JRZ9	810 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	DUSP4	Q13115	394 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	TTC38	Q5R3I4	469 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	HEATR6	Q6AI08	1181 aa	Known RBP	13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	CEP68	Q76N32	757 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	RALGPS2	Q86X27	583 aa	Predicted RBP	13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	GPIHBP1	Q8IV16	184 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	ARID3B	Q8IVW6	561 aa	Predicted RBP	13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	DAW1	Q8N136	415 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	BEST2	Q8NFU1	509 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	FAM200A	Q8TCP9	573 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	RSPRY1	Q96DX4	576 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	DRC1	Q96MC2	740 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	PGLYRP2	Q96PD5	576 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	NTPCR	Q9BSD7	190 aa	Known RBP	13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	LRRC3	Q9BY71	257 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	FOXP1	Q9H334	677 aa	Predicted RBP	13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	KCNG1	Q9UIX4	513 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	YIPF1	Q9Y548	306 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	NCAN	O14594	1321 aa		13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689	TPR	P12270	2363 aa	Known RBP	13.81	□□□□□ -0.2
SHMT2-223	ENST00000556689		E9PMD0	336 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	SPECC1L-ADORA2A	F8WAN1	911 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689		M0QZQ0	153 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	DPYSL4	O14531	572 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	SLC16A4	O15374	487 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	MEFV	O15553	781 aa	Predicted RBP	13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	TOM1L1	O75674	476 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	HOXA6	P31267	233 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	STRN3	Q13033	797 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	GPR17	Q13304	367 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	IL31	Q6EBC2	164 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689		Q6ZS52	159 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	HAUS6	Q7Z4H7	955 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	USP37	Q86T82	979 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	TMC8	Q8IU68	726 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	SYNPO	Q8N3V7	929 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	FAM160A2	Q8N612	972 aa	Predicted RBP	13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	C4orf32	Q8N8J7	132 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	SNX29	Q8TEQ0	813 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	C8orf76	Q96K31	380 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	RAB34	Q9BZG1	259 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	PLEKHA5	Q9HAU0	1116 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	TUBGCP4	Q9UGJ1	667 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	ASB3	Q9Y575	518 aa		13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.8	□□□□□ -0.2
SHMT2-223	ENST00000556689	OR6C75	A6NL08	312 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	SFI1	A8K8P3	1242 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	AXIN1	O15169	862 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	CLDN3	O15551	220 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	FGF19	O95750	216 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	OR4Q2	P0C623	313 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	KCNA4	P22459	653 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	LRPAP1	P30533	357 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	CTH	P32929	405 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	TRAPPC10	P48553	1259 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	NEK4	P51957	841 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	ARHGAP29	Q52LW3	1261 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	SEZ6	Q53EL9	994 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	WDR44	Q5JSH3	913 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	KRT79	Q5XKE5	535 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	RINT1	Q6NUQ1	792 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	TXNDC11	Q6PKC3	985 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	C1orf186	Q6ZWK4	172 aa		13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	13.79	□□□□□ -0.2
SHMT2-223	ENST00000556689	WDR5B	Q86VZ2	330 aa		13.79	□□□□□ -0.2

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