RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 ZBTB39O15060 712 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 TBC1D4O60343 1298 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 KRT2P35908 639 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 GGCXP38435 758 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 RARRES1P49788 294 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 CYP4A11Q02928 519 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 MBTD1Q05BQ5 628 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 NCBP1Q09161 790 aaKnown RBP11.06□□□□□ -0.64
SCFD1-220ENST00000556486 NR5A1Q13285 461 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 FZD5Q13467 585 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 CAPSQ13938 189 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 CTTNQ14247 550 aaKnown RBP11.06□□□□□ -0.64
SCFD1-220ENST00000556486 LIN9Q5TKA1 542 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 NCAPH2Q6IBW4 605 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 NPAS3Q8IXF0 933 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 GSTCDQ8NEC7 633 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 NETO1Q8TDF5 533 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 GTF3C6Q969F1 213 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 CLDN23Q96B33 292 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 MTMR9Q96QG7 549 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 EIF2AK1Q9BQI3 630 aaKnown RBP11.06□□□□□ -0.64
SCFD1-220ENST00000556486 CLSTN3Q9BQT9 956 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 COLEC11Q9BWP8 271 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 BACH2Q9BYV9 841 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 BRMS1Q9HCU9 246 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 SEMA4GQ9NTN9 838 aa11.06□□□□□ -0.64
SCFD1-220ENST00000556486 CASTOR2A6NHX0 329 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 TMEM229AB2RXF0 380 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 MARCH6O60337 910 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 TADA2AO75478 443 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 TDGF1P13385 188 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 ARF4P18085 180 aaPredicted RBP11.05□□□□□ -0.64
SCFD1-220ENST00000556486 PSMD5Q16401 504 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 SLC5A9Q2M3M2 681 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 HEATR6Q6AI08 1181 aaKnown RBP11.05□□□□□ -0.64
SCFD1-220ENST00000556486 LAIR1Q6GTX8 287 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 TANGO2Q6ICL3 276 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 ZNF852Q6ZMS4 543 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 PRR23CQ6ZRP0 262 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 TPH2Q8IWU9 490 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 HACE1Q8IYU2 909 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 SCG3Q8WXD2 468 aaKnown RBP11.05□□□□□ -0.64
SCFD1-220ENST00000556486 KCTD15Q96SI1 283 aaPredicted RBP11.05□□□□□ -0.64
SCFD1-220ENST00000556486 OSBPL6Q9BZF3 934 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 CXCL16Q9H2A7 254 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 TTC12Q9H892 705 aaPredicted RBP11.05□□□□□ -0.64
SCFD1-220ENST00000556486 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.05□□□□□ -0.64
SCFD1-220ENST00000556486 FNIP2Q9P278 1114 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 DNMT3BQ9UBC3 853 aaKnown RBP11.05□□□□□ -0.64
SCFD1-220ENST00000556486 ANGPTL2Q9UKU9 493 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 ZFP37Q9Y6Q3 630 aaPredicted RBP11.05□□□□□ -0.64
SCFD1-220ENST00000556486 LAMA1P25391 3075 aa11.05□□□□□ -0.64
SCFD1-220ENST00000556486 ATRXP46100 2492 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 COL4A2P08572 1712 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 CEP295Q9C0D2 2601 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 CHURC1-FNTBB4DL54 471 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 INO80B-WBP1J3KQ70 363 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 B4GALT5O43286 388 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 NEMFO60524 1076 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 KIF4AO95239 1232 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 NPTXRO95502 500 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 CEBPBP17676 345 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 GLRA2P23416 452 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 IGFBP6P24592 240 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-220ENST00000556486 SCTRP47872 440 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 FNTBP49356 437 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 SH3BP2P78314 561 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 PFKPQ01813 784 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 SATB1Q01826 763 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 ADCY1Q08828 1119 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 GRIK3Q13003 919 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 SIM2Q14190 667 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-220ENST00000556486 MRPL58Q14197 206 aaKnown RBP11.04□□□□□ -0.64
SCFD1-220ENST00000556486 CALCRLQ16602 461 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 ME3Q16798 604 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 FAM187BQ17R55 369 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 PABPC1LQ4VXU2 614 aaKnown RBP11.04□□□□□ -0.64
SCFD1-220ENST00000556486 AXDND1Q5T1B0 1012 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-220ENST00000556486 N4BP2L1Q5TBK1 243 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-220ENST00000556486 FAM171A1Q5VUB5 890 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 CDCA2Q69YH5 1023 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-220ENST00000556486 SLC27A1Q6PCB7 646 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-220ENST00000556486 NSUN7Q8NE18 718 aaKnown RBP11.04□□□□□ -0.64
SCFD1-220ENST00000556486 ASAP3Q8TDY4 903 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 TRIM6Q9C030 488 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-220ENST00000556486 PARP2Q9UGN5 583 aa11.04□□□□□ -0.64
SCFD1-220ENST00000556486 BTBD18B2RXH4 712 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 NCAM2O15394 837 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 NDUFB5O43674 189 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 XYLBO75191 536 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 SPATA31C1P0DKV0 1188 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 MPSTP25325 297 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 MAGEA9P43362 315 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 RPS9P46781 194 aaKnown RBP11.03□□□□□ -0.64
SCFD1-220ENST00000556486 CREMQ03060 361 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 ORC2Q13416 577 aaPredicted RBP11.03□□□□□ -0.64
SCFD1-220ENST00000556486 HSP90AA2PQ14568 343 aaPredicted RBP11.03□□□□□ -0.64
SCFD1-220ENST00000556486 SF3A2Q15428 464 aaKnown RBP11.03□□□□□ -0.64
SCFD1-220ENST00000556486 DIS3L2Q8IYB7 885 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms