RNA–Protein interactions for RNA: ENST00000556029.5

TMPO-212, Transcript of thymopoietin, human

TSL 1 (best) BASIC

Gene TMPO, Length 4,242 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMPO-212	ENST00000556029	SGPL1	O95470	568 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	EPHB1	P54762	984 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	13	□□□□□ -0.33
TMPO-212	ENST00000556029	NLRP7	Q8WX94	980 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	WNT8A	Q9H1J5	351 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	SLC9A2	Q9UBY0	812 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	SBF2	Q86WG5	1849 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	MARCKSL1	P49006	195 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	ALCAM	Q13740	583 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	NFIL3	Q16649	462 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	BTNL9	Q6UXG8	535 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	CDR2L	Q86X02	465 aa	Predicted RBP	13	□□□□□ -0.33
TMPO-212	ENST00000556029	HVCN1	Q96D96	273 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	BTBD6	Q96KE9	485 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	TTC1	Q99614	292 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	MED10	Q9BTT4	135 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	POLR3F	Q9H1D9	316 aa	Predicted RBP	13	□□□□□ -0.33
TMPO-212	ENST00000556029	SLC40A1	Q9NP59	571 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	ZNF302	Q9NR11	478 aa		13	□□□□□ -0.33
TMPO-212	ENST00000556029	GGPS1	O95749	300 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	TNNC2	P02585	160 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	KCNJ1	P48048	391 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	RWDD2B	P57060	319 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	RHPN2	Q8IUC4	686 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	CEP70	Q8NHQ1	597 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	ADPGK	Q9BRR6	497 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	SEMA4A	Q9H3S1	761 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	ATP6V0A4	Q9HBG4	840 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	PPARGC1A	Q9UBK2	798 aa	Known RBP	12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	GGA2	Q9UJY4	613 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	KLRG2	A4D1S0	409 aa	Predicted RBP	12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	SOX10	P56693	466 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	JAG1	P78504	1218 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	RNF168	Q8IYW5	571 aa	Predicted RBP	12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	RYBP	Q8N488	228 aa	Predicted RBP	12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.99	□□□□□ -0.33	4e-10	■■□□□ 13.1
TMPO-212	ENST00000556029	NENF	Q9UMX5	172 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	KIAA0391	O15091	583 aa	Known RBP	12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	APOE	P02649	317 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	RPL21	P46778	160 aa	Known RBP	12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	ACOT2	P49753	483 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	PPP3CA	Q08209	521 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	SYCP2L	Q5T4T6	812 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	C11orf63	Q6NUN7	778 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	HAUS2	Q9NVX0	235 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	SCOC	Q9UIL1	159 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	NHS	Q6T4R5	1651 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	CHUK	O15111	745 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	MUT	P22033	750 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	ATP8B4	Q8TF62	1192 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	KAT5	Q92993	513 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	RNF25	Q96BH1	459 aa	Predicted RBP	12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	ABCF3	Q9NUQ8	709 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	DMAC2	Q9NW81	257 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	WRAP73	Q9P2S5	460 aa	Predicted RBP	12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	USP20	Q9Y2K6	914 aa		12.99	□□□□□ -0.33
TMPO-212	ENST00000556029	RASA4B	C9J798	803 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	RASA4	O43374	803 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	KRT1	P04264	644 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	ICAM1	P05362	532 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	PGK2	P07205	417 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	POLR2B	P30876	1174 aa	Known RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	PLCB4	Q15147	1175 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	PPP6R3	Q5H9R7	873 aa	Predicted RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	CCDC124	Q96CT7	223 aa	Known RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	PRMT1	Q99873	361 aa	Known RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	ETNK1	Q9HBU6	452 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	NGRN	Q9NPE2	291 aa	Known RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	DBR1	Q9UK59	544 aa	Known RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029		H0YCG3	227 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	ONECUT3	O60422	494 aa	Predicted RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	VIL1	P09327	827 aa	Known RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	BACE1	P56817	501 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	TGFB2	P61812	414 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	HABP4	Q5JVS0	413 aa	Known RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	C9orf131	Q5VYM1	1079 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	ILDR2	Q71H61	639 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	PRELID2	Q8N945	189 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	MCPH1	Q8NEM0	835 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	EPS8L3	Q8TE67	593 aa	Known RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	C1orf54	Q8WWF1	131 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	FGD4	Q96M96	766 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	SPATA33	Q96N06	139 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	RIT2	Q99578	217 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	MRI	Q9BWK5	157 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	FAM129A	Q9BZQ8	928 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	ZWILCH	Q9H900	591 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	CD248	Q9HCU0	757 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	ACP6	Q9NPH0	428 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	ABT1	Q9ULW3	272 aa	Known RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	CLDN3	O15551	220 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	AGT	P01019	485 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	PYGM	P11217	842 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	PLS3	P13797	630 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	COIL	P38432	576 aa	Predicted RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	PHEX	P78562	749 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	IFI35	P80217	286 aa	Predicted RBP	12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	KCNV1	Q6PIU1	500 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	PYROXD1	Q8WU10	500 aa		12.98	□□□□□ -0.33
TMPO-212	ENST00000556029	NSMCE1	Q8WV22	266 aa		12.98	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms