RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 PIRO00625 290 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 CASP1P29466 404 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 TAF6P49848 677 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 LILRA4P59901 499 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 ROR1Q01973 937 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 SV2CQ496J9 727 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 KRBA2Q6ZNG9 492 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 EFCAB13Q8IY85 973 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 GRAMD1CQ8IYS0 662 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 GLIS3Q8NEA6 775 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 NOC3LQ8WTT2 800 aaKnown RBP22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 PCIF1Q9H4Z3 704 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 GDPD2Q9HCC8 539 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 WDR6Q9NNW5 1121 aaKnown RBP22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 AGPAT3Q9NRZ7 376 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 FBXL5Q9UKA1 691 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 R3HCC1Q9Y3T6 440 aaKnown RBP22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 OR6C75A6NL08 312 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 KLRC4O43908 158 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 TBC1D4O60343 1298 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 RFPL2O75678 378 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 OAZ2O95190 189 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 WEE2P0C1S8 567 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 TMEM191BP0C7N4 346 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 IGFBP6P24592 240 aaPredicted RBP22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 GUCY2FP51841 1108 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 TFAMQ00059 246 aaKnown RBP22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 KNOP1Q1ED39 458 aaKnown RBP22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 KMT5BQ4FZB7 885 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 C12orf56Q8IXR9 622 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 ZDHHC14Q8IZN3 488 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 ANKRD36BP1Q96IX9 119 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 ITGA11Q9UKX5 1188 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 TSC2P49815 1807 aa22.31■■□□□ 1.16
CCDC88C-210ENST00000555995 GOLGA8IPA6NC78 632 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 GOLGA8JA6NMD2 632 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 ADAM12O43184 909 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 ABLIM3O94929 683 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 ZNF202O95125 648 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 CPB1P15086 417 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 OVOS1Q6IE37 1185 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 METTL23Q86XA0 190 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 NELFCDQ8IXH7 590 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 XXYLT1Q8NBI6 393 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 SLC7A14Q8TBB6 771 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 ZNF707Q96C28 371 aaPredicted RBP22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 SENP8Q96LD8 212 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 CDH22Q9UJ99 828 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 C5orf42Q9H799 3197 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 SCN1AP35498 2009 aa22.3■■□□□ 1.16
CCDC88C-210ENST00000555995 C2CD4DB7Z1M9 353 aa22.29■■□□□ 1.16
CCDC88C-210ENST00000555995 PRPF40AO75400 957 aaKnown RBP22.29■■□□□ 1.16
CCDC88C-210ENST00000555995 RPN1P04843 607 aaKnown RBP22.29■■□□□ 1.16
CCDC88C-210ENST00000555995 ATF2P15336 505 aa22.29■■□□□ 1.16
CCDC88C-210ENST00000555995 HOXD13P35453 343 aa22.29■■□□□ 1.16
CCDC88C-210ENST00000555995 TMEM31Q5JXX7 168 aa22.29■■□□□ 1.16
CCDC88C-210ENST00000555995 LRRC52Q8N7C0 313 aa22.29■■□□□ 1.16
CCDC88C-210ENST00000555995 AFF4Q9UHB7 1163 aaKnown RBP22.29■■□□□ 1.16
CCDC88C-210ENST00000555995 MUTYHQ9UIF7 546 aa22.29■■□□□ 1.16
CCDC88C-210ENST00000555995 WDR27A2RRH5 827 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 PRRG1O14668 218 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 TGFB1I1O43294 461 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 GPR37L1O60883 481 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 TNNC2P02585 160 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 CYP11A1P05108 521 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 ANP32AP39687 249 aaKnown RBP22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 MYBPC2Q14324 1141 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 SNRNP35Q16560 246 aaKnown RBP22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 PTPN21Q16825 1174 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 RSPO2Q6UXX9 243 aaPredicted RBP22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 TCEAL8Q8IYN2 117 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 KHSRPQ92945 711 aaKnown RBP eCLIP22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 FNBP1Q96RU3 617 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 GOLPH3LQ9H4A5 285 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 EPHX3Q9H6B9 360 aa22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 HOOK1Q9UJC3 728 aaKnown RBP22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 ZFP37Q9Y6Q3 630 aaPredicted RBP22.28■■□□□ 1.16
CCDC88C-210ENST00000555995 TULP1O00294 542 aaPredicted RBP22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 PPEF2O14830 753 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 RHOBTB3O94955 611 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 LRG1P02750 347 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 SP100P23497 879 aaPredicted RBP22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 CYP2J2P51589 502 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 ARPP19P56211 112 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 DPYDQ12882 1025 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 KCNB1Q14721 858 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 CBWD2Q8IUF1 395 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 WDR49Q8IV35 697 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 KIAA0895Q8NCT3 520 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 TMEM174Q8WUU8 243 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 PDE11AQ9HCR9 933 aa22.27■■□□□ 1.16
CCDC88C-210ENST00000555995 KPNA7A9QM74 516 aa22.26■■□□□ 1.15
CCDC88C-210ENST00000555995 PDXKO00764 312 aa22.26■■□□□ 1.15
CCDC88C-210ENST00000555995 ITGB3P05106 788 aa22.26■■□□□ 1.15
CCDC88C-210ENST00000555995 GBP2P32456 591 aaPredicted RBP22.26■■□□□ 1.15
CCDC88C-210ENST00000555995 RBP5P82980 135 aa22.26■■□□□ 1.15
CCDC88C-210ENST00000555995 FAM160A1Q05DH4 1040 aa22.26■■□□□ 1.15
CCDC88C-210ENST00000555995 MYO1EQ12965 1108 aa22.26■■□□□ 1.15
CCDC88C-210ENST00000555995 STK4Q13043 487 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms