RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 PDZD7Q9H5P4 517 aa12.47□□□□□ -0.41
VPS33B-204ENST00000554660 HEBP1Q9NRV9 189 aa12.47□□□□□ -0.41
VPS33B-204ENST00000554660 ZSCAN32Q9NX65 697 aa12.47□□□□□ -0.41
VPS33B-204ENST00000554660 SNTG2Q9NY99 539 aa12.47□□□□□ -0.41
VPS33B-204ENST00000554660 CDV3Q9UKY7 258 aaKnown RBP12.47□□□□□ -0.41
VPS33B-204ENST00000554660 USP18Q9UMW8 372 aa12.47□□□□□ -0.41
VPS33B-204ENST00000554660 USP20Q9Y2K6 914 aa12.47□□□□□ -0.41
VPS33B-204ENST00000554660 KMT2BQ9UMN6 2715 aaPredicted RBP12.47□□□□□ -0.41
VPS33B-204ENST00000554660 EPG5Q9HCE0 2579 aa12.47□□□□□ -0.41
VPS33B-204ENST00000554660 NOTCH4Q99466 2003 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 LILRB5O75023 590 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 LYPLA2O95372 231 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 TPM1P09493 284 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 ZNF18P17022 549 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 MARCKSP29966 332 aaPredicted RBP12.46□□□□□ -0.41
VPS33B-204ENST00000554660 OR1D2P34982 312 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 TRAPPC10P48553 1259 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 ETF1P62495 437 aaKnown RBP12.46□□□□□ -0.41
VPS33B-204ENST00000554660 GABPB1Q06547 395 aaPredicted RBP12.46□□□□□ -0.41
VPS33B-204ENST00000554660 TBX2Q13207 712 aaPredicted RBP12.46□□□□□ -0.41
VPS33B-204ENST00000554660 NR5A1Q13285 461 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 MORC3Q14149 939 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 POSTNQ15063 836 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 GLRA4Q5JXX5 417 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 POTEHQ6S545 545 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 RSPO2Q6UXX9 243 aaPredicted RBP12.46□□□□□ -0.41
VPS33B-204ENST00000554660 PPP4R3CPQ6ZMV5 832 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 SLFN12Q8IYM2 578 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 MCRS1Q96EZ8 462 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 NAP1L4Q99733 375 aaKnown RBP12.46□□□□□ -0.41
VPS33B-204ENST00000554660 HSD17B14Q9BPX1 270 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 PLA2G2FQ9BZM2 168 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 PARD6AQ9NPB6 346 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 PRMT8Q9NR22 394 aaPredicted RBP12.46□□□□□ -0.41
VPS33B-204ENST00000554660 ANKEF1Q9NU02 776 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 MRPS23Q9Y3D9 190 aaKnown RBP12.46□□□□□ -0.41
VPS33B-204ENST00000554660 PCDHA5Q9Y5H7 936 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 CDY1Q9Y6F8 540 aa12.46□□□□□ -0.41
VPS33B-204ENST00000554660 CACNA1BQ00975 2339 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 DCDC2BA2VCK2 349 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 SHISA7A6NL88 538 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 WNT7AO00755 349 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 STX10O60499 249 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 SERPINC1P01008 464 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 EDN1P05305 212 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 THP07101 528 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 CEBPBP17676 345 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 MAGEA9P43362 315 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 TOB1P50616 345 aaPredicted RBP12.45□□□□□ -0.42
VPS33B-204ENST00000554660 LMNB2Q03252 620 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 ELAVL2Q12926 359 aaKnown RBP12.45□□□□□ -0.42
VPS33B-204ENST00000554660 MTAPQ13126 283 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 RAB33AQ14088 237 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 GRM2Q14416 872 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 ARID5BQ14865 1188 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 LPAL2Q16609 132 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 TMEM132AQ24JP5 1023 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 CDCA2Q69YH5 1023 aaPredicted RBP12.45□□□□□ -0.42
VPS33B-204ENST00000554660 NELL1Q92832 810 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 SECISBP2LQ93073 1101 aaKnown RBP12.45□□□□□ -0.42
VPS33B-204ENST00000554660 SMARCE1Q969G3 411 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 CLDN23Q96B33 292 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 BRMS1Q9HCU9 246 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 PRMT7Q9NVM4 692 aaPredicted RBP12.45□□□□□ -0.42
VPS33B-204ENST00000554660 MTRRQ9UBK8 725 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 NDRG2Q9UN36 371 aaKnown RBP12.45□□□□□ -0.42
VPS33B-204ENST00000554660 GDAQ9Y2T3 454 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 COL4A2P08572 1712 aa12.45□□□□□ -0.42
VPS33B-204ENST00000554660 USP27XA6NNY8 438 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 I3L4J1 428 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 ECI2O75521 394 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 RHOP08100 348 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 POU2F2P09086 479 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 FGFR3P22607 806 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 TGM1P22735 817 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 TKTP29401 623 aaKnown RBP12.44□□□□□ -0.42
VPS33B-204ENST00000554660 DMTNQ08495 405 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 FZD5Q13467 585 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 CALCRLQ16602 461 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 EEF1DP3Q658K8 133 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 TANGO2Q6ICL3 276 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 PDXDC1Q6P996 788 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 ZNF852Q6ZMS4 543 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 ZBTB8OSQ8IWT0 167 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 GPR161Q8N6U8 529 aaKnown RBP12.44□□□□□ -0.42
VPS33B-204ENST00000554660 BSNDQ8WZ55 320 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 DDX27Q96GQ7 796 aaKnown RBP12.44□□□□□ -0.42
VPS33B-204ENST00000554660 NAA15Q9BXJ9 866 aaKnown RBP12.44□□□□□ -0.42
VPS33B-204ENST00000554660 ZMYND15Q9H091 742 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 GOLGA2P5Q9HBQ8 144 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 FAM53CQ9NYF3 392 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 MAN1B1Q9UKM7 699 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 PCDHA12Q9UN75 941 aa12.44□□□□□ -0.42
VPS33B-204ENST00000554660 BTBD18B2RXH4 712 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 BIN1O00499 593 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 NRG2O14511 850 aaPredicted RBP12.43□□□□□ -0.42
VPS33B-204ENST00000554660 N4BP3O15049 544 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 ATP8B1O43520 1251 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 ACTN4O43707 911 aaKnown RBP12.43□□□□□ -0.42
VPS33B-204ENST00000554660 B3GAT3O94766 335 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms