RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 TBXAS1P24557 533 aaPredicted RBP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 CPT1AP50416 773 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 ADAM17P78536 824 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 PURAQ00577 322 aaKnown RBP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 SGSM1Q2NKQ1 1148 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 WDR72Q3MJ13 1102 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 GLRA4Q5JXX5 417 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 CXCL17Q6UXB2 119 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 MTERF4Q7Z6M4 381 aaKnown RBP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 CXorf38Q8TB03 319 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 ZNF564Q8TBZ8 553 aaPredicted RBP13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 C11orf70Q9BRQ4 267 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 SMYD3Q9H7B4 428 aa13.62□□□□□ -0.23
VIPAS39-206ENST00000553888 ITGA4P13612 1032 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 LACTBP83111 547 aaPredicted RBP13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 LLGL1Q15334 1064 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 TFAP2BQ92481 460 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 CYP1A2P05177 515 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 ELNP15502 786 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 COMTP21964 271 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 POLR2BP30876 1174 aaKnown RBP13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 ZNF132P52740 706 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 AP3M2P53677 418 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 CBX1P83916 185 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 SURF1Q15526 300 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 GNASQ5JWF2 1037 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 ZNF410Q86VK4 478 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 RHOT2Q8IXI1 618 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 KLHL7Q8IXQ5 586 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 MCOLN2Q8IZK6 566 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 SYCE1Q8N0S2 351 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 ZNF606Q8WXB4 792 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 KRT12Q99456 494 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 NXF3Q9H4D5 531 aaKnown RBP13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 NOC2LQ9Y3T9 749 aaKnown RBP13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 NR2E1Q9Y466 385 aa13.61□□□□□ -0.23
VIPAS39-206ENST00000553888 IL18RAPO95256 599 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 CYP1A1P04798 512 aaPredicted RBP13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 AKR1A1P14550 325 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 AKAP5P24588 427 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 LONRF2Q1L5Z9 754 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 MMGT1Q8N4V1 131 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 USP38Q8NB14 1042 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 ZMAT2Q96NC0 199 aaKnown RBP13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 ACAP3Q96P50 834 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 CCDC94Q9BW85 323 aaPredicted RBP13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 GCOM2Q9BZD3 368 aaPredicted RBP13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 CNTN6Q9UQ52 1028 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 SMIM35A0A1B0GVV1 85 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 PPEF2O14830 753 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 CYBAP13498 195 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 NOMO3P69849 1222 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 MMS22LQ6ZRQ5 1243 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 WNT8BQ93098 351 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 RPGRIP1Q96KN7 1286 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 TWNKQ96RR1 684 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 ARFGAP3Q9NP61 516 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 GTF3C4Q9UKN8 822 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 MROH7Q68CQ1 1323 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 SCN10AQ9Y5Y9 1956 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 ESYT3A0FGR9 886 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 CCDC151A5D8V7 595 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 DARSP14868 501 aaKnown RBP13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 PSEN1P49768 467 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 FCGRTP55899 365 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 TMEM132DQ14C87 1099 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 TRADDQ15628 312 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 BEND6Q5SZJ8 279 aaPredicted RBP13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 KIF12Q96FN5 646 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 FAM81BQ96LP2 452 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 ADPGKQ9BRR6 497 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 ST7Q9NRC1 585 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 KLK14Q9P0G3 267 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 AGAP1Q9UPQ3 857 aa13.6□□□□□ -0.23
VIPAS39-206ENST00000553888 C17orf102A2RUQ5 167 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 CCND3P30281 292 aaPredicted RBP13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 NSFP46459 744 aaKnown RBP13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 SNX17Q15036 470 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 MON1BQ7L1V2 547 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 C7orf31Q8N865 590 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 C1orf131Q8NDD1 294 aaKnown RBP13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 SMC1BQ8NDV3 1235 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 C18orf25Q96B23 403 aaPredicted RBP13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 ANAPC7Q9UJX3 599 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 PIN4Q9Y237 131 aaKnown RBP13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 PDCD11Q14690 1871 aaKnown RBP13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 RALGAPA2Q2PPJ7 1873 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 BPIFB4P59827 614 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 CENPCQ03188 943 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 BRD3Q15059 726 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 RNF39Q9H2S5 420 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 RNF186Q9NXI6 227 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 TUBGCP4Q9UGJ1 667 aa13.59□□□□□ -0.23
VIPAS39-206ENST00000553888 EIF4BP23588 611 aaKnown RBP13.58□□□□□ -0.24
VIPAS39-206ENST00000553888 CACNB2Q08289 660 aaPredicted RBP13.58□□□□□ -0.24
VIPAS39-206ENST00000553888 ZNF667Q5HYK9 610 aa13.58□□□□□ -0.24
VIPAS39-206ENST00000553888 PIAS4Q8N2W9 510 aaPredicted RBP13.58□□□□□ -0.24
VIPAS39-206ENST00000553888 PBKQ96KB5 322 aa13.58□□□□□ -0.24
VIPAS39-206ENST00000553888 FUT8Q9BYC5 575 aa13.58□□□□□ -0.24
VIPAS39-206ENST00000553888 OSBPL7Q9BZF2 842 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms