RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 PRAMEF10O60809 474 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 SOAT2O75908 522 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 AGFG2O95081 481 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 ESRRBO95718 433 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 GNAI3P08754 354 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 SBK3P0C264 359 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 FCER1AP12319 257 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 KCNA2P16389 499 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 PRDX5P30044 214 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 INHBEP58166 350 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 GNAI1P63096 354 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 HSD11B2P80365 405 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 ZNF844Q08AG5 666 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 NOGQ13253 232 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 HLXQ14774 488 aaPredicted RBP4.3□□□□□ -1.72
VRK1-202ENST00000553683 CCDC93Q567U6 631 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 HECTD2Q5U5R9 776 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 EMC10Q5UCC4 262 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 CLNKQ7Z7G1 428 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 FAM90A1Q86YD7 464 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 VRK3Q8IV63 474 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 RGMAQ96B86 450 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 MVB12AQ96EY5 273 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 CDH19Q9H159 772 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 ANKFY1Q9P2R3 1169 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 HSFX1Q9UBD0 423 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 DMTF1Q9Y222 760 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 MTO1Q9Y2Z2 717 aaKnown RBP4.3□□□□□ -1.72
VRK1-202ENST00000553683 EPN1Q9Y6I3 576 aaPredicted RBP4.3□□□□□ -1.72
VRK1-202ENST00000553683 AKAP10O43572 662 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 OFD1O75665 1012 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 SRGNP10124 158 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 PROZP22891 400 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 PIK3CGP48736 1102 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 ANXA11P50995 505 aaKnown RBP4.29□□□□□ -1.72
VRK1-202ENST00000553683 SEC24CP53992 1094 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 RPS7P62081 194 aaKnown RBP4.29□□□□□ -1.72
VRK1-202ENST00000553683 MPP3Q13368 585 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 TP53BP2Q13625 1128 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 KIF22Q14807 665 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 SMN1Q16637 294 aaKnown RBP4.29□□□□□ -1.72
VRK1-202ENST00000553683 FLYWCH1Q4VC44 716 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 TMPRSS9Q7Z410 1059 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 GPR149Q86SP6 731 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 ASB10Q8WXI3 467 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 NACC2Q96BF6 587 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 RNF31Q96EP0 1072 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 CDK5RAP3Q96JB5 506 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 KLHL32Q96NJ5 620 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 MAP3K14Q99558 947 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 VRK1Q99986 396 aaPredicted RBP4.29□□□□□ -1.72
VRK1-202ENST00000553683 ZSWIM1Q9BR11 485 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 RHOBTB2Q9BYZ6 727 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 GTPBP4Q9BZE4 634 aaKnown RBP4.29□□□□□ -1.72
VRK1-202ENST00000553683 SLC12A5Q9H2X9 1139 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 BRD9Q9H8M2 597 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 UNKLQ9H9P5 680 aaKnown RBP4.29□□□□□ -1.72
VRK1-202ENST00000553683 INTS13Q9NVM9 706 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 IP6K2Q9UHH9 426 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 FEZ2Q9UHY8 353 aaPredicted RBP4.29□□□□□ -1.72
VRK1-202ENST00000553683 MAP3K2Q9Y2U5 619 aa4.29□□□□□ -1.72
VRK1-202ENST00000553683 CCDC195A0A1B0GUA6 201 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 H3BML4 177 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 PROM1O43490 865 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 LMNAP02545 664 aaKnown RBP4.28□□□□□ -1.72
VRK1-202ENST00000553683 FTLP02792 175 aaPredicted RBP4.28□□□□□ -1.72
VRK1-202ENST00000553683 CT47B1P0C2W7 299 aaPredicted RBP4.28□□□□□ -1.72
VRK1-202ENST00000553683 PF4V1P10720 104 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 TYRP14679 529 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 HSPA6P17066 643 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 ADRA1BP35368 520 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 COL10A1Q03692 680 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 DYRK1AQ13627 763 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 ERCC6LQ2NKX8 1250 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 CXorf57Q6NSI4 855 aaKnown RBP4.28□□□□□ -1.72
VRK1-202ENST00000553683 HEATR3Q7Z4Q2 680 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 ANKRD13AQ8IZ07 590 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 CFAP52Q8N1V2 620 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 RAB24Q969Q5 203 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 AGAP2Q99490 1192 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 MRPL46Q9H2W6 279 aaKnown RBP4.28□□□□□ -1.72
VRK1-202ENST00000553683 NMRK2Q9NPI5 230 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 CTTNBP2NLQ9P2B4 639 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 USP25Q9UHP3 1055 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 ZNF180Q9UJW8 692 aa4.28□□□□□ -1.72
VRK1-202ENST00000553683 AATKQ6ZMQ8 1374 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 CCDC78A2IDD5 438 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 UNC119BA6NIH7 251 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 SUV39H1O43463 412 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 GJB1P08034 283 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 RARBP10826 455 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 ITGAMP11215 1152 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 MPLP40238 635 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 RAB27AP51159 221 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 MAP2K6P52564 334 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 NKX6-1P78426 367 aaPredicted RBP4.27□□□□□ -1.73
VRK1-202ENST00000553683 HABP2Q14520 560 aaPredicted RBP4.27□□□□□ -1.73
VRK1-202ENST00000553683 NBPF8Q3BBV2 869 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 KIAA0895LQ68EN5 471 aa4.27□□□□□ -1.73
VRK1-202ENST00000553683 MICALCLQ6ZW33 695 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms