RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 FASTKD1Q53R41 847 aaKnown RBP13.15□□□□□ -0.3
COL4A6-209ENST00000545689 ATF7IP2Q5U623 682 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 OR6J1Q8NGC5 347 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 XAB2Q9HCS7 855 aaKnown RBP13.15□□□□□ -0.3
COL4A6-209ENST00000545689 ADA2Q9NZK5 511 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 MROH1Q8NDA8 1641 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 SNRPAP09012 282 aaKnown RBP13.15□□□□□ -0.3
COL4A6-209ENST00000545689 CYP2C8P10632 490 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 OCA2Q04671 838 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 SV2CQ496J9 727 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 LRRC43Q8N309 656 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 AGBL3Q8NEM8 1001 aa13.15□□□□□ -0.3
COL4A6-209ENST00000545689 SPDYE1Q8NFV5 336 aaPredicted RBP13.15□□□□□ -0.3
COL4A6-209ENST00000545689 CUL3Q13618 768 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 NTRK3Q16288 839 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 INTS5Q6P9B9 1019 aaKnown RBP13.14□□□□□ -0.31
COL4A6-209ENST00000545689 C16orf89Q6UX73 402 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 PBXIP1Q96AQ6 731 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 RASSF10A6NK89 507 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 CES2O00748 559 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 PTK7Q13308 1070 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 ZNF235Q14590 738 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 SNX19Q92543 992 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 GMCL1Q96IK5 515 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 KCNK16Q96T55 309 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 UNC45AQ9H3U1 944 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 WHRNQ9P202 907 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 HBP1O60381 514 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 E2F6O75461 281 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 GZMAP12544 262 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 IL10P22301 178 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 NLRP11P59045 1033 aaKnown RBP13.14□□□□□ -0.31
COL4A6-209ENST00000545689 MAPK7Q13164 816 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 CENPPQ6IPU0 288 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 TRIM65Q6PJ69 517 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 SETD3Q86TU7 594 aaPredicted RBP13.14□□□□□ -0.31
COL4A6-209ENST00000545689 TRIM54Q9BYV2 358 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 ING2Q9H160 280 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 VPS33BQ9H267 617 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 CCT8L1PA6NM43 557 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 TRAPPC3O43617 180 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 MAPTP10636 758 aaKnown RBP13.14□□□□□ -0.31
COL4A6-209ENST00000545689 HSD17B3P37058 310 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 ITIH4Q14624 930 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 MICALL2Q8IY33 904 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 RAB6BQ9NRW1 208 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 LMCD1Q9NZU5 365 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 TMEM120BA0PK00 339 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 ANP32DO95626 131 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 SPRP35270 261 aaPredicted RBP13.14□□□□□ -0.31
COL4A6-209ENST00000545689 ACTN3Q08043 901 aaPredicted RBP13.14□□□□□ -0.31
COL4A6-209ENST00000545689 PRUNE1Q86TP1 453 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 CALML6Q8TD86 181 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 TMC2Q8TDI7 906 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 SCFD1Q8WVM8 642 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 PRKAG2Q9UGJ0 569 aa13.14□□□□□ -0.31
COL4A6-209ENST00000545689 MAP2P11137 1827 aaKnown RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 PNPLA4P41247 253 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 GEMIN4P57678 1058 aaKnown RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 INPP5AQ14642 412 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 EFHC1Q5JVL4 640 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 AFG1LQ8WV93 481 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 GFM2Q969S9 779 aaKnown RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 ASPSCR1Q9BZE9 553 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 PABPC3Q9H361 631 aaKnown RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 MEGF6O75095 1541 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 KIF1CO43896 1103 aaKnown RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 GARTP22102 1010 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 BTNL9Q6UXG8 535 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 FUT8Q9BYC5 575 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 ZNF518BQ9C0D4 1074 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 MYO1DO94832 1006 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 CUL2Q13617 745 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 DCAF4L1Q3SXM0 396 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 SLC26A7Q8TE54 656 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 CASKIN2Q8WXE0 1202 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 TRIM45Q9H8W5 580 aaPredicted RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 TCRBV5S4A2TA0A5A2 114 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 LRRIQ3A6PVS8 624 aaPredicted RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 DFFAO00273 331 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 STIP1P31948 543 aaKnown RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 CD302Q8IX05 232 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 CAVIN3Q969G5 261 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 OSBPL1AQ9BXW6 950 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 KLHL11Q9NVR0 708 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 DBR1Q9UK59 544 aaKnown RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 PHF20L1A8MW92 1017 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 EEF2KO00418 725 aaKnown RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 HOXD10P28358 340 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 HDAC4P56524 1084 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 LONP2Q86WA8 852 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 CLEC10AQ8IUN9 316 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 KCNV2Q8TDN2 545 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 DACT3Q96B18 629 aaPredicted RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 CLMNQ96JQ2 1002 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 CEP19Q96LK0 163 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 RUSC1Q9BVN2 902 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 TEX12Q9BXU0 123 aa13.13□□□□□ -0.31
COL4A6-209ENST00000545689 PIN4Q9Y237 131 aaKnown RBP13.13□□□□□ -0.31
COL4A6-209ENST00000545689 RNF103-CHMP3A0A140T963 221 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms