RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 TBC1D20Q96BZ9 403 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 VMP1Q96GC9 406 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 CDHR1Q96JP9 859 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 GBP5Q96PP8 586 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 KATNBL1Q9H079 304 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 ZMYND12Q9H0C1 365 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 PCDH18Q9HCL0 1135 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 RIC8AQ9NPQ8 531 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 BTBD7Q9P203 1132 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 EVLQ9UI08 416 aaPredicted RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 ACAD8Q9UKU7 415 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 COL4A6Q14031 1691 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 PVALEFA0A1B0GWK0 134 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 SLC15A5A6NIM6 579 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 TSPY2A6NKD2 308 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 GPR25O00155 361 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 PODXLO00592 558 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 AFPP02771 609 aaKnown RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 BMP3P12645 472 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 GSTT1P30711 240 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 MAPK4P31152 587 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 PTDSS1P48651 473 aaKnown RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 CLK2P49760 499 aaKnown RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 POLGP54098 1239 aaPredicted RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 DHX9Q08211 1270 aaKnown RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 FXNQ16595 210 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 FAM133BQ5BKY9 247 aaKnown RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 TYW1BQ6NUM6 668 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 PPP1R21Q6ZMI0 780 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 CYFIP1Q7L576 1253 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 SMYD4Q8IYR2 804 aaPredicted RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 PNMA1Q8ND90 353 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 FRS2Q8WU20 508 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 SOCS4Q8WXH5 440 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 CATSPER2Q96P56 530 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 APBA2Q99767 749 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 UBE2OQ9C0C9 1292 aaKnown RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 R3HDMLQ9H3Y0 253 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 TXNRD2Q9NNW7 524 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 TIMMDC1Q9NPL8 285 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 ZDHHC7Q9NXF8 308 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 PTTG2Q9NZH5 202 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 RABL2AQ9UBK7 228 aaPredicted RBP5.59□□□□□ -1.51
USP28-213ENST00000544967 LGALS13Q9UHV8 139 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 SALL4Q9UJQ4 1053 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 USH1CQ9Y6N9 552 aa5.59□□□□□ -1.51
USP28-213ENST00000544967 ZSCAN5CA6NGD5 496 aaPredicted RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 F8W8V4 182 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 CYTH3O43739 400 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 RARGP13631 454 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 PRKCIP41743 596 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 MTIF2P46199 727 aaKnown RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 STAT2P52630 851 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 INHBCP55103 352 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 NR1H3Q13133 447 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 TMEM132BQ14DG7 1078 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 ZNF792Q3KQV3 632 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 KBTBD12Q3ZCT8 623 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 INO80DQ53TQ3 878 aaPredicted RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 FAM47AQ5JRC9 791 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 SLFN13Q68D06 897 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 MICU3Q86XE3 530 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 ZC3H3Q8IXZ2 948 aaKnown RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 ZNF654Q8IZM8 581 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 ZBTB8BQ8NAP8 495 aaPredicted RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 UTP4Q969X6 686 aaKnown RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 NEUROG2Q9H2A3 272 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 CAPN10Q9HC96 672 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 UBN1Q9NPG3 1134 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 STX18Q9P2W9 335 aaKnown RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 MTRF1LQ9UGC7 380 aaKnown RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 TMED5Q9Y3A6 229 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 ADGRA3Q8IWK6 1321 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 SYNGAP1Q96PV0 1343 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 ESYT3A0FGR9 886 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 LRRC53A6NM62 1247 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 DNAJC6O75061 913 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 ZWINTO95229 277 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 CALML3P27482 149 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 HOXC13P31276 330 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 RGS2P41220 211 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 CDK7P50613 346 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 HADHBP55084 474 aaKnown RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 HNRNPDQ14103 355 aaKnown RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 Q4G0T1 1027 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 SFMBT2Q5VUG0 894 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 ARHGEF18Q6ZSZ5 1173 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 MYLK4Q86YV6 388 aaPredicted RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 GUF1Q8N442 669 aaKnown RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 FITM2Q8N6M3 262 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 C4orf32Q8N8J7 132 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 FANCBQ8NB91 859 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 PPFIBP2Q8ND30 876 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 FAM13CQ8NE31 585 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 CHURC1Q8WUH1 139 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 HES6Q96HZ4 224 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 MS4A14Q96JA4 679 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 P2RX7Q99572 595 aaKnown RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 ERP44Q9BS26 406 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 PPP1R12CQ9BZL4 782 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms