RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SEMA4D	Q92854	862 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	ELMO3	Q96BJ8	720 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	C11orf84	Q9BUA3	381 aa	Predicted RBP	10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	PLVAP	Q9BX97	442 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	INTS2	Q9H0H0	1204 aa	Known RBP	10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	ALG13	Q9NP73	1137 aa	Known RBP	10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	SNX9	Q9Y5X1	595 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	ARHGEF37	A1IGU5	675 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	LGALS16	A8MUM7	142 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	TMEM189-UBE2V1	I3L0A0	370 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	CYB561D2	O14569	222 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	SPTLC1	O15269	473 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	PMM2	O15305	246 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	CBFA2T2	O43439	604 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	GPM6B	Q13491	265 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	BMS1	Q14692	1282 aa	Known RBP	10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	TIGD5	Q53EQ6	642 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	SPOPL	Q6IQ16	392 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	SPRED2	Q7Z698	418 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	METTL23	Q86XA0	190 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	C3orf58	Q8NDZ4	430 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	APPL2	Q8NEU8	664 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	CXorf38	Q8TB03	319 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	BCL7C	Q8WUZ0	217 aa	Predicted RBP	10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	TAF4B	Q92750	862 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	SENP8	Q96LD8	212 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	NT5C1B	Q96P26	610 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	GPR62	Q9BZJ7	368 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	RTN4	Q9NQC3	1192 aa	Known RBP	10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	MARCH5	Q9NX47	278 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	IFNK	Q9P0W0	207 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	GCNT4	Q9P109	453 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	POLI	Q9UNA4	740 aa		10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	TIMM13	Q9Y5L4	95 aa	Predicted RBP	10.91	□□□□□ -0.66
CPSF7-221	ENST00000543545	GTPBP10	A4D1E9	387 aa	Known RBP	10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	C2CD2L	O14523	706 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	LPXN	O60711	386 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	LRRN2	O75325	713 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	ASS1	P00966	412 aa	Known RBP	10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	LINC00271	P0C7V0	271 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	ODC1	P11926	461 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	SLC9A1	P19634	815 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	NOP14	P78316	857 aa	Known RBP	10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	PLCB3	Q01970	1234 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	UVSSA	Q2YD98	709 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	USP41	Q3LFD5	358 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	CD300LG	Q6UXG3	332 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	SCARA5	Q6ZMJ2	495 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	TAS1R1	Q7RTX1	841 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	APTX	Q7Z2E3	356 aa	Known RBP	10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	TMC7	Q7Z402	723 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	DDX53	Q86TM3	631 aa	Known RBP	10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	VPS52	Q8N1B4	723 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	POF1B	Q8WVV4	589 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	TATDN2	Q93075	761 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	SUSD3	Q96L08	255 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	LSM14B	Q9BX40	385 aa	Known RBP	10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	TRIM5	Q9C035	493 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	XYLT2	Q9H1B5	865 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	ZNF576	Q9H609	170 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	STK39	Q9UEW8	545 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	DSE	Q9UL01	958 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	PCDHB8	Q9UN66	801 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	COQ4	Q9Y3A0	265 aa		10.9	□□□□□ -0.66
CPSF7-221	ENST00000543545	MICAL3	Q7RTP6	2002 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545		A0A1B0GTH6	734 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	GOLGA6L3	A6NEY3	463 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	C5orf67	F2Z3F1	127 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	TEX33	O43247	280 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	STAU1	O95793	577 aa	Known RBP	10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	SOD2	P04179	222 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	UROD	P06132	367 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	PON1	P27169	355 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	TKT	P29401	623 aa	Known RBP	10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	SYCP1	Q15431	976 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	WSCD1	Q658N2	575 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	RRAGA	Q7L523	313 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	THEM5	Q8N1Q8	247 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	PPM1K	Q8N3J5	372 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	TOP6BL	Q8N6T0	577 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	OR6B3	Q8NGW1	331 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	SPPL3	Q8TCT6	385 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	RIN2	Q8WYP3	895 aa	Predicted RBP	10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	B3GALT6	Q96L58	329 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	TTPAL	Q9BTX7	342 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	XPO4	Q9C0E2	1151 aa	Known RBP	10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	NIF3L1	Q9GZT8	377 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	SNX25	Q9H3E2	840 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	APOBEC3G	Q9HC16	384 aa	Known RBP	10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	UBE2T	Q9NPD8	197 aa	Predicted RBP	10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	ENTPD7	Q9NQZ7	604 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545	GDAP2	Q9NXN4	497 aa		10.89	□□□□□ -0.67
CPSF7-221	ENST00000543545		H3BNC9	293 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545		H7C4K7	107 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545		M0QZQ0	153 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	RFXAP	O00287	272 aa		10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	SOX1	O00570	391 aa	Predicted RBP	10.88	□□□□□ -0.67
CPSF7-221	ENST00000543545	SYN3	O14994	580 aa		10.88	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms