RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TRIM72Q6ZMU5 477 aa17.39■□□□□ 0.37
COL4A1-204ENST00000543140 C1orf54Q8WWF1 131 aa17.39■□□□□ 0.37
COL4A1-204ENST00000543140 CDT1Q9H211 546 aa17.39■□□□□ 0.37
COL4A1-204ENST00000543140 IFT122Q9HBG6 1241 aa17.39■□□□□ 0.37
COL4A1-204ENST00000543140 NXF1Q9UBU9 619 aaKnown RBP17.39■□□□□ 0.37
COL4A1-204ENST00000543140 USTQ9Y2C2 406 aa17.39■□□□□ 0.37
COL4A1-204ENST00000543140 ATP8A1Q9Y2Q0 1164 aa17.39■□□□□ 0.37
COL4A1-204ENST00000543140 PLXNB2O15031 1838 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 A0A087WZ62 844 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 VTNP04004 478 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 SSR1P43307 286 aaKnown RBP17.38■□□□□ 0.37
COL4A1-204ENST00000543140 ZNF132P52740 706 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 GRM1Q13255 1194 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 SNX1Q13596 522 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 ZNF699Q32M78 642 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 FDXACB1Q9BRP7 624 aaPredicted RBP17.38■□□□□ 0.37
COL4A1-204ENST00000543140 NIF3L1Q9GZT8 377 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 PCYOX1Q9UHG3 505 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 RASAL2Q9UJF2 1139 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 CCL15-CCL14A0A0B4J2E2 113 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.38■□□□□ 0.37
COL4A1-204ENST00000543140 GJC1P36383 396 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 COILP38432 576 aaPredicted RBP17.38■□□□□ 0.37
COL4A1-204ENST00000543140 ATP1A2P50993 1020 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 LAMC2Q13753 1193 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 CCL15Q16663 113 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 SKIDA1Q1XH10 827 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 MAMDC4Q6UXC1 1216 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 UBR7Q8N806 425 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 FBXO25Q8TCJ0 367 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 HERPUD2Q9BSE4 406 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 ZDHHC18Q9NUE0 388 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.38■□□□□ 0.37
COL4A1-204ENST00000543140 AKT3Q9Y243 479 aa17.38■□□□□ 0.37
COL4A1-204ENST00000543140 H0YGN5 161 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 GPR25O00155 361 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 TNNC2P02585 160 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 RPL21P46778 160 aaKnown RBP17.37■□□□□ 0.37
COL4A1-204ENST00000543140 PPARDQ03181 441 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 PHF13Q86YI8 300 aaPredicted RBP17.37■□□□□ 0.37
COL4A1-204ENST00000543140 CD302Q8IX05 232 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 CPB2Q96IY4 423 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 MS4A4AQ96JQ5 239 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 POLIQ9UNA4 740 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 NFS1Q9Y697 457 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 IVNS1ABPQ9Y6Y0 642 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 PROSCO94903 275 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 GH1P01241 217 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 RAP1GAPP47736 663 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 TAS2R40P59535 323 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 RPL7AP62424 266 aaKnown RBP17.37■□□□□ 0.37
COL4A1-204ENST00000543140 PTP4A2Q12974 167 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 LRRC31Q6UY01 552 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 CCDC50Q8IVM0 306 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 C1orf131Q8NDD1 294 aaKnown RBP17.37■□□□□ 0.37
COL4A1-204ENST00000543140 ATG4AQ8WYN0 398 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 HEMGNQ9BXL5 484 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 XYLT2Q9H1B5 865 aa17.37■□□□□ 0.37
COL4A1-204ENST00000543140 RPF1Q9H9Y2 349 aaKnown RBP17.37■□□□□ 0.37
COL4A1-204ENST00000543140 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.37■□□□□ 0.37
COL4A1-204ENST00000543140 TLR3O15455 904 aaKnown RBP17.36■□□□□ 0.37
COL4A1-204ENST00000543140 CETPP11597 493 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 SLC1A1P43005 524 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 ZNF844Q08AG5 666 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 SURF1Q15526 300 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 FOXR1Q6PIV2 292 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 BRI3BPQ8WY22 251 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 TFAP2BQ92481 460 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 ANKRD36BP1Q96IX9 119 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 PLVAPQ9BX97 442 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 MRPL47Q9HD33 250 aaKnown RBP17.36■□□□□ 0.37
COL4A1-204ENST00000543140 ASAP2O43150 1006 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 NFICP08651 508 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 ASPAP45381 313 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 PHKA2P46019 1235 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 GPR162Q16538 588 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 CYP1B1Q16678 543 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 SGO2Q562F6 1265 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 ZNF484Q5JVG2 852 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 PLEKHA7Q6IQ23 1121 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 ZDHHC24Q6UX98 284 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 DPP9Q86TI2 863 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 DDX27Q96GQ7 796 aaKnown RBP17.36■□□□□ 0.37
COL4A1-204ENST00000543140 CAPS2Q9BXY5 557 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 RABEP2Q9H5N1 569 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 GRHL1Q9NZI5 618 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 TNFSF13BQ9Y275 285 aa17.36■□□□□ 0.37
COL4A1-204ENST00000543140 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.36■□□□□ 0.37
COL4A1-204ENST00000543140 KAT6AQ92794 2004 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 IQCA1LA6NCM1 817 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 GOLGA6L10A6NI86 522 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 FSCN2O14926 492 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 C1QBPQ07021 282 aaKnown RBP17.35■□□□□ 0.37
COL4A1-204ENST00000543140 ORC1Q13415 861 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 VCPIP1Q96JH7 1222 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 ATP6V1G3Q96LB4 118 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 LRRC4CQ9HCJ2 640 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 CHST7Q9NS84 486 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 LOC102724159A0A0B4J2E5 919 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 PODXLO00592 558 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms