RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 FBXL13Q8NEE6 735 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 HPDLQ96IR7 371 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 PAAF1Q9BRP4 392 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 TUBGCP2Q9BSJ2 902 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 HERC2P3Q9BVR0 1158 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 CBX8Q9HC52 389 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 CHST7Q9NS84 486 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 RANBP2P49792 3224 aaKnown RBP13.11□□□□□ -0.31
DDX55-210ENST00000543016 KPNA7A9QM74 516 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 ASS1P00966 412 aaKnown RBP13.1□□□□□ -0.31
DDX55-210ENST00000543016 CTSAP10619 480 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 TYMPP19971 482 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 POU3F3P20264 500 aaPredicted RBP13.1□□□□□ -0.31
DDX55-210ENST00000543016 FGFR3P22607 806 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 PBX3P40426 434 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 VWA3BQ502W6 1294 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 WDR44Q5JSH3 913 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 KIAA1841Q6NSI8 718 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 CD300LGQ6UXG3 332 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 DSTYKQ6XUX3 929 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 TMEM173Q86WV6 379 aaPredicted RBP13.1□□□□□ -0.31
DDX55-210ENST00000543016 TMEM86AQ8N2M4 240 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 POF1BQ8WVV4 589 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 PPP2R3CQ969Q6 453 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 FAM81BQ96LP2 452 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 TTPALQ9BTX7 342 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 TLR9Q9NR96 1032 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.1□□□□□ -0.31
DDX55-210ENST00000543016 RAB20Q9NX57 234 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 LIMA1Q9UHB6 759 aaKnown RBP13.1□□□□□ -0.31
DDX55-210ENST00000543016 MTUS1Q9ULD2 1270 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 PCDHB8Q9UN66 801 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 IRAK3Q9Y616 596 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 GBF1Q92538 1859 aa13.1□□□□□ -0.31
DDX55-210ENST00000543016 FSD2A1L4K1 749 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 H7C4K7 107 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 LPXNO60711 386 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 HUS1O60921 280 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 C1RP00736 705 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 CST3P01034 146 aaPredicted RBP13.09□□□□□ -0.31
DDX55-210ENST00000543016 HLA-DRAP01903 254 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 CYP11A1P05108 521 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 URODP06132 367 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 ODC1P11926 461 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 PIK3CAP42336 1068 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 MYL7Q01449 175 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 DSG1Q02413 1049 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 MYO9BQ13459 2157 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 ZNF699Q32M78 642 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 TIGD5Q53EQ6 642 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 ZNF667Q5HYK9 610 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 FAM171A1Q5VUB5 890 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 ANKS3Q6ZW76 656 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 METTL23Q86XA0 190 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 VPS52Q8N1B4 723 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 TTC39CQ8N584 583 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 TOP6BLQ8N6T0 577 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 C3orf58Q8NDZ4 430 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 BCL7CQ8WUZ0 217 aaPredicted RBP13.09□□□□□ -0.31
DDX55-210ENST00000543016 LRCH3Q96II8 777 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 SENP8Q96LD8 212 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 GPR62Q9BZJ7 368 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 XYLT2Q9H1B5 865 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 TTYH1Q9H313 450 aaPredicted RBP13.09□□□□□ -0.31
DDX55-210ENST00000543016 NDST4Q9H3R1 872 aa13.09□□□□□ -0.31
DDX55-210ENST00000543016 MRPL17Q9NRX2 175 aaKnown RBP13.09□□□□□ -0.31
DDX55-210ENST00000543016 CYB561D2O14569 222 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 PPEF2O14830 753 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 FSCN2O14926 492 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 GRM6O15303 877 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 OAZ2O95190 189 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 VNN1O95497 513 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 GLUD2P49448 558 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 MYL6P60660 151 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 TNNC1P63316 161 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 SMC1AQ14683 1233 aaKnown RBP13.08□□□□□ -0.32
DDX55-210ENST00000543016 KRT31Q15323 416 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 FILIP1LQ4L180 1135 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 CBWD6Q4V339 395 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 CBWD3Q5JTY5 395 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 CBWD5Q5RIA9 395 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 FKBP15Q5T1M5 1219 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 KIAA0319Q5VV43 1072 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 GBP6Q6ZN66 633 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 TMC7Q7Z402 723 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 TAS1R2Q8TE23 839 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 PIK3R5Q8WYR1 880 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 RABGGTAQ92696 567 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 MRPL38Q96DV4 380 aaKnown RBP13.08□□□□□ -0.32
DDX55-210ENST00000543016 DNAI2Q9GZS0 605 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 ZBP1Q9H171 429 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 HSD3B7Q9H2F3 369 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 MMRN2Q9H8L6 949 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 CERS4Q9HA82 394 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 CYP3A43Q9HB55 503 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 ALG13Q9NP73 1137 aaKnown RBP13.08□□□□□ -0.32
DDX55-210ENST00000543016 CACNG4Q9UBN1 327 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 BACE2Q9Y5Z0 518 aa13.08□□□□□ -0.32
DDX55-210ENST00000543016 SPTLC1O15269 473 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 TACC1O75410 805 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms