RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 MYO16Q9Y6X6 1858 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 HEPACAM2A8MVW5 462 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 CHURC1-FNTBB4DL54 471 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 K7ESF4 209 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 MCM4P33991 863 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 FNTBP49356 437 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 FXR2P51116 673 aaKnown RBP eCLIP19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 MLLT6P55198 1093 aaPredicted RBP19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 SIM2Q14190 667 aaPredicted RBP19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 PPM1JQ5JR12 505 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 SPEM1Q8N4L4 309 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 LEMD2Q8NC56 503 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 BEST2Q8NFU1 509 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 ZBTB45Q96K62 511 aaPredicted RBP19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 RBM12Q9NTZ6 932 aaKnown RBP19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 DDX19AQ9NUU7 478 aaKnown RBP19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 C2orf42Q9NWW7 574 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 MAFFQ9ULX9 164 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 KIAA1549LQ6ZVL6 1849 aa19.48■□□□□ 0.71
CLSTN3-214ENST00000542663 HIP1RO75146 1068 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 CPB1P15086 417 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 HOXC13P31276 330 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 SOX9P48436 509 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 MAPK7Q13164 816 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 CSRP2Q16527 193 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 SLC10A6Q3KNW5 377 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 MPZL3Q6UWV2 235 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 PRR23CQ6ZRP0 262 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 Q6ZS52 159 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 TMC8Q8IU68 726 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 CRISPLD1Q9H336 500 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 LRWD1Q9UFC0 647 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 TUBGCP4Q9UGJ1 667 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 PCDHB8Q9UN66 801 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 YIPF1Q9Y548 306 aa19.47■□□□□ 0.71
CLSTN3-214ENST00000542663 SCN1AP35498 2009 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 SLC38A8A6NNN8 435 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 E9PMD0 336 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 GDF9O60383 454 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 PAPSS2O95340 614 aaPredicted RBP19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 FCHO2Q0JRZ9 810 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 SEZ6Q53EL9 994 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 TTC38Q5R3I4 469 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 STXBP5Q5T5C0 1151 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 APPL2Q8NEU8 664 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 TCHPQ9BT92 498 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 RUSC1Q9BVN2 902 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 DNAJC25Q9H1X3 360 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 KMT5AQ9NQR1 393 aa19.46■□□□□ 0.71
CLSTN3-214ENST00000542663 A0A1W2PRU2 124 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 M0QZQ0 153 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 CHADO15335 359 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 OR4Q2P0C623 313 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 HARSP12081 509 aaKnown RBP19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 DMP1Q13316 513 aaPredicted RBP19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 NBR1Q14596 966 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 SAFBQ15424 915 aaKnown RBP eCLIP19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 ST3GAL2Q16842 350 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 TXNDC11Q6PKC3 985 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 LONP2Q86WA8 852 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 GPIHBP1Q8IV16 184 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 IGSF22Q8N9C0 903 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 CSGALNACT1Q8TDX6 532 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 E2F7Q96AV8 911 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 MSANTD3Q96H12 275 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 LRRC3BQ96PB8 259 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 MKNK1Q9BUB5 465 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 GPR88Q9GZN0 384 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 FOXP1Q9H334 677 aaPredicted RBP19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 SLITRK6Q9H5Y7 841 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 TIMM13Q9Y5L4 95 aaPredicted RBP19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 LAMA1P25391 3075 aa19.45■□□□□ 0.7
CLSTN3-214ENST00000542663 SDK1Q7Z5N4 2213 aa19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 SLC16A4O15374 487 aa19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 OAZ2O95190 189 aa19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 CNR2P34972 360 aa19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 LRRC32Q14392 662 aa19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 HEATR6Q6AI08 1181 aaKnown RBP19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 SNX29Q8TEQ0 813 aa19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 PGLYRP2Q96PD5 576 aa19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 C8orf33Q9H7E9 229 aaPredicted RBP19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 RBM19Q9Y4C8 960 aaKnown RBP19.44■□□□□ 0.7
CLSTN3-214ENST00000542663 CNOT1A5YKK6 2376 aaKnown RBP19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 MYBPHLA2RUH7 354 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 SFI1A8K8P3 1242 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 PP2D1A8MPX8 630 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 SPECC1L-ADORA2AF8WAN1 911 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 CTHP32929 405 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 KPNA1P52294 538 aaPredicted RBP19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 YWHAHQ04917 246 aaPredicted RBP19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 PDIA5Q14554 519 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 NOLC1Q14978 699 aaKnown RBP eCLIP19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 RINT1Q6NUQ1 792 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 C1orf186Q6ZWK4 172 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 KCNK18Q7Z418 384 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 ARID3BQ8IVW6 561 aaPredicted RBP19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 YAF2Q8IY57 180 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 FAM160A2Q8N612 972 aaPredicted RBP19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms