RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 SPARTQ8N0X7 666 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 HERVK_113Q902F9 699 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 LARP4BQ92615 738 aaKnown RBP11.75□□□□□ -0.53
CDH3-203ENST00000542274 SH3KBP1Q96B97 665 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 CALML4Q96GE6 196 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 SEC16BQ96JE7 1060 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 ZHX3Q9H4I2 956 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 SCHIP1Q9P0W5 487 aaPredicted RBP11.75□□□□□ -0.53
CDH3-203ENST00000542274 TFR2Q9UP52 801 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 GOLGA8JA6NMD2 632 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 E9PMD0 336 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 GOLGA8TH3BQL2 631 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 ENPP3O14638 875 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 MUSKO15146 869 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 HOXA2O43364 376 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 RNASEH2AO75792 299 aaKnown RBP11.75□□□□□ -0.53
CDH3-203ENST00000542274 DDNO94850 711 aaPredicted RBP11.75□□□□□ -0.53
CDH3-203ENST00000542274 CDK4P11802 303 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 ACADSP16219 412 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 KRT83P78385 493 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 NIPAL4Q0D2K0 466 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 NBPF12Q5TAG4 269 aaPredicted RBP11.75□□□□□ -0.53
CDH3-203ENST00000542274 FKBP1CQ5VVH2 108 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 ZNF598Q86UK7 904 aaKnown RBP11.75□□□□□ -0.53
CDH3-203ENST00000542274 NT5DC4Q86YG4 428 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 CLVS1Q8IUQ0 354 aaPredicted RBP11.75□□□□□ -0.53
CDH3-203ENST00000542274 GSPT2Q8IYD1 628 aaKnown RBP11.75□□□□□ -0.53
CDH3-203ENST00000542274 CACNA2D3Q8IZS8 1091 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 CSGALNACT2Q8N6G5 542 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 MRPL9Q9BYD2 267 aaKnown RBP11.75□□□□□ -0.53
CDH3-203ENST00000542274 ANO3Q9BYT9 981 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 KLHL4Q9C0H6 718 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 SEMA6BQ9H3T3 888 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 UBN1Q9NPG3 1134 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 C12orf4Q9NQ89 552 aa11.75□□□□□ -0.53
CDH3-203ENST00000542274 POTEB3A0JP26 581 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 POTECB2RU33 542 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 GZMAP12544 262 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 PRKACAP17612 351 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 EVI2BP34910 448 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 FXR2P51116 673 aaKnown RBP eCLIP11.74□□□□□ -0.53
CDH3-203ENST00000542274 CEP78Q5JTW2 689 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 POTEBQ6S5H4 581 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 PHLDB2Q86SQ0 1253 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 RAVER1Q8IY67 606 aaKnown RBP11.74□□□□□ -0.53
CDH3-203ENST00000542274 ANKRD36BP1Q96IX9 119 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 CHP1Q99653 195 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 C7orf25Q9BPX7 421 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 DEFB129Q9H1M3 183 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 BCAS3Q9H6U6 928 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 PPANQ9NQ55 473 aaKnown RBP11.74□□□□□ -0.53
CDH3-203ENST00000542274 RNF181Q9P0P0 153 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 GOLGA8CPA6NN73 597 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 hCG_1984214I3L0E3 225 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 MATN2O00339 956 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 PSMA7O14818 248 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 KMOO15229 486 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 ADAM23O75077 832 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 EPB41P11171 864 aaKnown RBP11.74□□□□□ -0.53
CDH3-203ENST00000542274 SERPINB3P29508 390 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 CAP2P40123 477 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 ALDH5A1P51649 535 aaPredicted RBP11.74□□□□□ -0.53
CDH3-203ENST00000542274 PPP2R2AP63151 447 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 SP140Q13342 867 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 CCDC14Q49A88 953 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 DAB2IPQ5VWQ8 1189 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 ZNF600Q6ZNG1 722 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 SV2BQ7L1I2 683 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 FAM186BQ8IYM0 893 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 NATD1Q8N6N6 113 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 DCAF4Q8WV16 495 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 MED30Q96HR3 178 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 MOCS1Q9NZB8 636 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 MKL2Q9ULH7 1088 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 PCDHA12Q9UN75 941 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 CFL2Q9Y281 166 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 TELO2Q9Y4R8 837 aa11.74□□□□□ -0.53
CDH3-203ENST00000542274 A8MUI8 341 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 H7C1D1 291 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 CYP1A1P04798 512 aaPredicted RBP11.73□□□□□ -0.53
CDH3-203ENST00000542274 CD9P21926 228 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 TTLL12Q14166 644 aaPredicted RBP11.73□□□□□ -0.53
CDH3-203ENST00000542274 QPCTQ16769 361 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 TMEM266Q2M3C6 531 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 PRR16Q569H4 304 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 FAM83BQ5T0W9 1011 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 OR7G1Q8NGA0 311 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 DIS3LQ8TF46 1054 aaKnown RBP11.73□□□□□ -0.53
CDH3-203ENST00000542274 P2RX5Q93086 422 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 ZMYND8Q9ULU4 1186 aaPredicted RBP11.73□□□□□ -0.53
CDH3-203ENST00000542274 TTC26A0AVF1 554 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 PRSS47A8MTI9 375 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 MEIS1O00470 390 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 TRPA1O75762 1119 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 ZBED1O96006 694 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 BMP3P12645 472 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 MDH1P40925 334 aaKnown RBP11.73□□□□□ -0.53
CDH3-203ENST00000542274 THOP1P52888 689 aa11.73□□□□□ -0.53
CDH3-203ENST00000542274 HIRAP54198 1017 aaPredicted RBP11.73□□□□□ -0.53
CDH3-203ENST00000542274 APBA1Q02410 837 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms