RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	SCARA3	Q6AZY7	606 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	TRMT10C	Q7L0Y3	403 aa	Known RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	ROPN1B	Q9BZX4	212 aa	Predicted RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	ROPN1	Q9HAT0	212 aa	Predicted RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	NOD2	Q9HC29	1040 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	HOMER3	Q9NSC5	361 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	FGFR1OP2	Q9NVK5	253 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	AGO2	Q9UKV8	859 aa	Known RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	PPP2R3B	Q9Y5P8	575 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	MAFB	Q9Y5Q3	323 aa	Predicted RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	TTLL13P	A6NNM8	815 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	EDN1	P05305	212 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	NF2	P35240	595 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	GPC3	P51654	580 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	ZBTB33	Q86T24	672 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	PNMA8A	Q86V59	439 aa	Predicted RBP	13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	ANKRD42	Q8N9B4	389 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	MAGEC3	Q8TD91	643 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	TMEM174	Q8WUU8	243 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	ZBTB10	Q96DT7	871 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	FBXL18	Q96ME1	805 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	PCYT2	Q99447	389 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	GSTTP1	A0A1W2PQM5	241 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	FSCN2	O14926	492 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	STAM2	O75886	525 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	FARP2	O94887	1054 aa	Predicted RBP	13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	UBOX5	O94941	541 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	TCF7	P36402	384 aa	Predicted RBP	13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	CDR2	Q01850	454 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	SH3D19	Q5HYK7	790 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	LLGL2	Q6P1M3	1020 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	VSTM1	Q6UX27	236 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	DNER	Q8NFT8	737 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	TMC2	Q8TDI7	906 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	FAM212A	Q96EL1	285 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	PWWP2A	Q96N64	755 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	TRIM7	Q9C029	511 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	TXNRD2	Q9NNW7	524 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	KCNK9	Q9NPC2	374 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	UVRAG	Q9P2Y5	699 aa		13.31	□□□□□ -0.28
RNF4-222	ENST00000541204	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	SRGAP2C	P0DJJ0	459 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	EZR	P15311	586 aa	Known RBP	13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	PIK3CA	P42336	1068 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	STAT5B	P51692	787 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	KYNU	Q16719	465 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	TMEM63B	Q5T3F8	832 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	USP37	Q86T82	979 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	CCDC125	Q86Z20	511 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	LRRC71	Q8N4P6	559 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	GDAP1	Q8TB36	358 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	CPA5	Q8WXQ8	436 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	HERPUD2	Q9BSE4	406 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	MSTO1	Q9BUK6	570 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	PORCN	Q9H237	461 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	C1orf112	Q9NSG2	853 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	RBAK	Q9NYW8	714 aa	Predicted RBP	13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	WHRN	Q9P202	907 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	ANAPC7	Q9UJX3	599 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	EXTL3	O43909	919 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	ARIH2	O95376	493 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	OAS1	P00973	400 aa	Known RBP	13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	GH1	P01241	217 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	GART	P22102	1010 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	SLC8A1	P32418	973 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	VPS41	P49754	854 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	TDRD10	Q5VZ19	366 aa	Known RBP	13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	NUGGC	Q68CJ6	796 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	ACAD10	Q6JQN1	1059 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	RHBDF2	Q6PJF5	856 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	PASD1	Q8IV76	773 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	DDX1	Q92499	740 aa	Known RBP	13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	N4BP2L2	Q92802	583 aa	Predicted RBP	13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	SERPINB12	Q96P63	405 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	TCHP	Q9BT92	498 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	COQ4	Q9Y3A0	265 aa		13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	USP15	Q9Y4E8	981 aa	Predicted RBP	13.3	□□□□□ -0.28
RNF4-222	ENST00000541204	GRIN3B	O60391	1043 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	MAPK4	P31152	587 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	ITGA8	P53708	1063 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	ADCY1	Q08828	1119 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204		Q3C1V9	767 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	DAB2IP	Q5VWQ8	1189 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	RIOX2	Q8IUF8	465 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	SNF8	Q96H20	258 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	DHX33	Q9H6R0	707 aa	Known RBP	13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	ADARB2	Q9NS39	739 aa	Known RBP	13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	TBK1	Q9UHD2	729 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	MYPN	Q86TC9	1320 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	HLA-DRA	P01903	254 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	GJB1	P08034	283 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	ITIH2	P19823	946 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	ELF1	P32519	619 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	KCNJ2	P63252	427 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	MPP2	Q14168	576 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	HSDL1	Q3SXM5	330 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	RPAIN	Q86UA6	219 aa		13.29	□□□□□ -0.28
RNF4-222	ENST00000541204	CDR2L	Q86X02	465 aa	Predicted RBP	13.29	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms