RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 TMEM59LQ9UK28 342 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 CNTN6Q9UQ52 1028 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 PCDHB4Q9Y5E5 795 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 MAP2K7O14733 419 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 DDX3YO15523 660 aaKnown RBP10.3□□□□□ -0.76
CLIP1-212ENST00000540304 B4GALT4O60513 344 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 IL18RAPO95256 599 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 VTNP04004 478 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 UNGP13051 313 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-212ENST00000540304 TNNC1P63316 161 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 FOXD4Q12950 439 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-212ENST00000540304 TAF1CQ15572 869 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-212ENST00000540304 ZNF280DQ6N043 979 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 HDAC7Q8WUI4 952 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 YIPF2Q9BWQ6 316 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 UVRAGQ9P2Y5 699 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 NOC2LQ9Y3T9 749 aaKnown RBP10.3□□□□□ -0.76
CLIP1-212ENST00000540304 UMODL1Q5DID0 1318 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 POLR3GO15318 223 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 ADCY6O43306 1168 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 ATMINO43313 823 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 CST3P01034 146 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 TNNC2P02585 160 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 TMEM191BP0C7N4 346 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 MCF2P10911 925 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 MAGEA8P43361 318 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 PLA2G4AP47712 749 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 RPS6KA3P51812 740 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 OSTNP61366 133 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 TFAMQ00059 246 aaKnown RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 TRPC3Q13507 836 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 AMHR2Q16671 573 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 SGSM1Q2NKQ1 1148 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 SCARA3Q6AZY7 606 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 TMEM270Q6UE05 265 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 CCNI2Q6ZMN8 369 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 TRIM72Q6ZMU5 477 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 CDR2LQ86X02 465 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 ARL10Q8N8L6 244 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 RBBP8NLQ8NC74 664 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 ZNF564Q8TBZ8 553 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 PPM1EQ8WY54 764 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 PPP1R16BQ96T49 567 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 SLX1AQ9BQ83 275 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 NUP85Q9BW27 656 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 RPF1Q9H9Y2 349 aaKnown RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 STIM2Q9P246 746 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 DMGDHQ9UI17 866 aaKnown RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 ALG6Q9Y672 507 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 MIF4GDA9UHW6 222 aaKnown RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 GPR25O00155 361 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 GNA15P30679 374 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 MYL6P60660 151 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 POU5F1Q01860 360 aaKnown RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 MARCH8Q5T0T0 291 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 EFCAB13Q8IY85 973 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 UBR7Q8N806 425 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 NLRP7Q8WX94 980 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 TRIM11Q96F44 468 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 ANKRD36BP1Q96IX9 119 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 RPS6KC1Q96S38 1066 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 KRT12Q99456 494 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 CARD9Q9H257 536 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 PDZD7Q9H5P4 517 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 CNOT8Q9UFF9 292 aaKnown RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 BLOC1S6Q9UL45 172 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 TTC7AQ9ULT0 858 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-212ENST00000540304 DOCK3Q8IZD9 2030 aa10.29□□□□□ -0.76
CLIP1-212ENST00000540304 RRN3P2A6NIE6 340 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 CYP1A1P04798 512 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-212ENST00000540304 PYGLP06737 847 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 CXCL8P10145 99 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 MYBL1P10243 752 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 MNAT1P51948 309 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 RWDD2BP57060 319 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 SLC7A5Q01650 507 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 CENPCQ03188 943 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 SNX1Q13596 522 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 SMYD5Q6GMV2 418 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 RGMBQ6NW40 437 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 ZNF410Q86VK4 478 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 MYLK4Q86YV6 388 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-212ENST00000540304 SCLT1Q96NL6 688 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 SH3GL3Q99963 347 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 NIF3L1Q9GZT8 377 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 G3BP2Q9UN86 482 aaKnown RBP10.28□□□□□ -0.76
CLIP1-212ENST00000540304 GNEQ9Y223 722 aaKnown RBP10.28□□□□□ -0.76
CLIP1-212ENST00000540304 A6NJR5 290 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 TMEM110-MUSTN1A8MSY1 372 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 CCDC188H7C350 402 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 DYNC1LI2O43237 492 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-212ENST00000540304 CSDE1O75534 798 aaKnown RBP10.28□□□□□ -0.76
CLIP1-212ENST00000540304 TNFRSF8P28908 595 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 NSFP46459 744 aaKnown RBP10.28□□□□□ -0.76
CLIP1-212ENST00000540304 ZNF132P52740 706 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 MESDQ14696 234 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 CASP8Q14790 479 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 KYAT1Q16773 422 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 PRAMEF19Q5SWL8 479 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 DCAF12L1Q5VU92 463 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms