RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PGLYRP2Q96PD5 576 aa16■□□□□ 0.15
VPS28-215ENST00000531924 HINFPQ9BQA5 517 aa16■□□□□ 0.15
VPS28-215ENST00000531924 SLITRK6Q9H5Y7 841 aa16■□□□□ 0.15
VPS28-215ENST00000531924 BRD9Q9H8M2 597 aa16■□□□□ 0.15
VPS28-215ENST00000531924 BLOC1S4Q9NUP1 217 aa16■□□□□ 0.15
VPS28-215ENST00000531924 R4GN57 208 aa16■□□□□ 0.15
VPS28-215ENST00000531924 A0A0B4J269 797 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 LAMTOR5O43504 91 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 LRRN2O75325 713 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 PIGRP01833 764 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 SP9P0CG40 484 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 CD72P21854 359 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 NMT1P30419 496 aaKnown RBP15.99■□□□□ 0.15
VPS28-215ENST00000531924 GUCY2FP51841 1108 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 EPHB3P54753 998 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 TMEM132DQ14C87 1099 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 ZBTB6Q15916 424 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 FAM78AQ5JUQ0 283 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 PRSS36Q5K4E3 855 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 ADALQ6DHV7 355 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 OVOS1Q6IE37 1185 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 HS6ST3Q8IZP7 471 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 KCNN1Q92952 543 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 TRMT61BQ9BVS5 477 aaKnown RBP15.99■□□□□ 0.15
VPS28-215ENST00000531924 OSBPL6Q9BZF3 934 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 PLA2G2FQ9BZM2 168 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 DLGAP2Q9P1A6 1054 aa15.99■□□□□ 0.15
VPS28-215ENST00000531924 OR4Q2P0C623 313 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 MAGEA9P43362 315 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 GTF2BQ00403 316 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 GRIN1Q05586 938 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 GRM2Q14416 872 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 SPATA1Q5VX52 437 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 RRAGBQ5VZM2 374 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 JADE1Q6IE81 842 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 METTL23Q86XA0 190 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 MAP4K3Q8IVH8 894 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 SMARCD2Q92925 531 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 IRF7Q92985 503 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 DDX23Q9BUQ8 820 aaKnown RBP15.98■□□□□ 0.15
VPS28-215ENST00000531924 CCSER1Q9C0I3 900 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 GPR88Q9GZN0 384 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 LTB4R2Q9NPC1 389 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 CEP72Q9P209 647 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 CPSF3Q9UKF6 684 aaKnown RBP15.98■□□□□ 0.15
VPS28-215ENST00000531924 DERAQ9Y315 318 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 YIPF1Q9Y548 306 aa15.98■□□□□ 0.15
VPS28-215ENST00000531924 PTPRZ1P23471 2315 aaPredicted RBP15.97■□□□□ 0.15
VPS28-215ENST00000531924 TRIP11Q15643 1979 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 GLULP15104 373 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 TYMPP19971 482 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 AARSP49588 968 aaKnown RBP eCLIP15.97■□□□□ 0.151e-6■■■■■ 36.1
VPS28-215ENST00000531924 ACOT2P49753 483 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 LILRA4P59901 499 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 DUSP4Q13115 394 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 GPR17Q13304 367 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 MYBPC2Q14324 1141 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 ZC2HC1CQ53FD0 456 aaPredicted RBP15.97■□□□□ 0.15
VPS28-215ENST00000531924 DYMQ7RTS9 669 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 YAF2Q8IY57 180 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 TMEM130Q8N3G9 435 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 ZSCAN18Q8TBC5 510 aaPredicted RBP15.97■□□□□ 0.15
VPS28-215ENST00000531924 FAM200AQ8TCP9 573 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 POMGNT1Q8WZA1 660 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 DNASE1L2Q92874 299 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 EPSTI1Q96J88 318 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 SENP8Q96LD8 212 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 ASB16Q96NS5 453 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 MRPL44Q9H9J2 332 aaKnown RBP15.97■□□□□ 0.15
VPS28-215ENST00000531924 HEBP1Q9NRV9 189 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 STK17AQ9UEE5 414 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 AGO2Q9UKV8 859 aaKnown RBP15.97■□□□□ 0.15
VPS28-215ENST00000531924 DSEQ9UL01 958 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 MTF2Q9Y483 593 aaPredicted RBP15.97■□□□□ 0.15
VPS28-215ENST00000531924 CLIC4Q9Y696 253 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 CFAP54Q96N23 3096 aa15.97■□□□□ 0.15
VPS28-215ENST00000531924 CITO14578 2027 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 MAN2B1O00754 1011 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 ZNF263O14978 683 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 FAM189A1O60320 539 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 NFICP08651 508 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 GJA1P17302 382 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 PSMC3P17980 439 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 GDI1P31150 447 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 CCR2P41597 374 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 CEBPZQ03701 1054 aaKnown RBP15.96■□□□□ 0.15
VPS28-215ENST00000531924 POSTNQ15063 836 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 TEAD2Q15562 447 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 TAF12Q16514 161 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 C9orf57Q5W0N0 161 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 SV2BQ7L1I2 683 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 THEM5Q8N1Q8 247 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 LRRC15Q8TF66 581 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 DEPDC1BQ8WUY9 529 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 ATRIPQ8WXE1 791 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 E2F7Q96AV8 911 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 ZSWIM3Q96MP5 696 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 ASB7Q9H672 318 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 NDRG2Q9UN36 371 aaKnown RBP15.96■□□□□ 0.15
VPS28-215ENST00000531924 EXOC7Q9UPT5 735 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms