RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	SLC35F6	Q8N357	371 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	FIBCD1	Q8N539	461 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	ZSWIM2	Q8NEG5	633 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	SECISBP2L	Q93073	1101 aa	Known RBP	10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	ZNF689	Q96CS4	500 aa	Predicted RBP	10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	FAM212A	Q96EL1	285 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	RPGRIP1	Q96KN7	1286 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	CALR3	Q96L12	384 aa	Known RBP	10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	SNX27	Q96L92	541 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	FAM81B	Q96LP2	452 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	ZFP42	Q96MM3	310 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	CASD1	Q96PB1	797 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	ALS2CR12	Q96Q35	445 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	MRPL9	Q9BYD2	267 aa	Known RBP	10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	STK33	Q9BYT3	514 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	PBX4	Q9BYU1	374 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	GAN	Q9H2C0	597 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	NKX2-4	Q9H2Z4	354 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	RPF1	Q9H9Y2	349 aa	Known RBP	10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	RC3H2	Q9HBD1	1191 aa	Known RBP	10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	NLRC4	Q9NPP4	1024 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	ARGLU1	Q9NWB6	273 aa	Predicted RBP	10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	RBAK	Q9NYW8	714 aa	Predicted RBP	10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	ARHGAP20	Q9P2F6	1191 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	CPSF3	Q9UKF6	684 aa	Known RBP	10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	YBX2	Q9Y2T7	364 aa	Known RBP	10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	CEP290	O15078	2479 aa		10.17	□□□□□ -0.78
NXF1-209	ENST00000531474	BTNL10	A8MVZ5	291 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	PTGES	O14684	152 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	LDHA	P00338	332 aa	Known RBP	10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	POMC	P01189	267 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	DNAJB2	P25686	324 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	GTF2H1	P32780	548 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	CASP4	P49662	377 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	VAMP7	P51809	220 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	SMAD3	P84022	425 aa	Known RBP	10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	SLC18A3	Q16572	532 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	SLC10A6	Q3KNW5	377 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	LRIT3	Q3SXY7	679 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	GLRA4	Q5JXX5	417 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	SPOUT1	Q5T280	376 aa	Known RBP	10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	SMYD5	Q6GMV2	418 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	IQCE	Q6IPM2	695 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	CRELD2	Q6UXH1	353 aa	Predicted RBP	10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	CBWD2	Q8IUF1	395 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	GPR161	Q8N6U8	529 aa	Known RBP	10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	RDH13	Q8NBN7	331 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	SP7	Q8TDD2	431 aa	Predicted RBP	10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	TMC2	Q8TDI7	906 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	CRACR2A	Q9BSW2	395 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	CXCL16	Q9H2A7	254 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	TBC1D13	Q9NVG8	400 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	HCST	Q9UBK5	93 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	INTU	Q9ULD6	942 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	REXO2	Q9Y3B8	237 aa	Known RBP	10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	JRKL	Q9Y4A0	524 aa		10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	MRPL42	Q9Y6G3	142 aa	Known RBP	10.16	□□□□□ -0.78
NXF1-209	ENST00000531474	COL4A6	Q14031	1691 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	PTPRS	Q13332	1948 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	ZNF233	A6NK53	670 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	LACTBL1	A8MY62	500 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	EPHB6	O15197	1021 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	INPPL1	O15357	1258 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	MEFV	O15553	781 aa	Predicted RBP	10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	ADRB2	P07550	413 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	SLC9A1	P19634	815 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	CKAP4	Q07065	602 aa	Known RBP	10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	GRIK3	Q13003	919 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	RAPGEF1	Q13905	1077 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	BMS1	Q14692	1282 aa	Known RBP	10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	SNRNP35	Q16560	246 aa	Known RBP	10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	PAPD7	Q5XG87	772 aa	Known RBP	10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	PPP2R2D	Q66LE6	453 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	HGSNAT	Q68CP4	663 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	BRSK2	Q8IWQ3	736 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	GSTCD	Q8NEC7	633 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	RSPH1	Q8WYR4	309 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	RABGGTA	Q92696	567 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	GOLGA1	Q92805	767 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	TIFA	Q96CG3	184 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	NOX5	Q96PH1	765 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	FAM193B	Q96PV7	902 aa	Predicted RBP	10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	CARD6	Q9BX69	1037 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	PLEKHA5	Q9HAU0	1116 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	MIOS	Q9NXC5	875 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	GCNT4	Q9P109	453 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	CNTN3	Q9P232	1028 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	KANSL3	Q9P2N6	904 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	RNF14	Q9UBS8	474 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	MTUS1	Q9ULD2	1270 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	SAR1B	Q9Y6B6	198 aa		10.15	□□□□□ -0.78
NXF1-209	ENST00000531474	TTC3	P53804	2025 aa		10.14	□□□□□ -0.79
NXF1-209	ENST00000531474	SMIM28	A0A1B0GU29	152 aa		10.14	□□□□□ -0.79
NXF1-209	ENST00000531474	LINC01553	A4QN01	128 aa		10.14	□□□□□ -0.79
NXF1-209	ENST00000531474	ZC3H11A	O75152	810 aa	Known RBP eCLIP	10.14	□□□□□ -0.79
NXF1-209	ENST00000531474	ARHGEF15	O94989	841 aa		10.14	□□□□□ -0.79
NXF1-209	ENST00000531474	IL18RAP	O95256	599 aa		10.14	□□□□□ -0.79
NXF1-209	ENST00000531474	TH	P07101	528 aa		10.14	□□□□□ -0.79
NXF1-209	ENST00000531474	NFIC	P08651	508 aa		10.14	□□□□□ -0.79
NXF1-209	ENST00000531474	KCNE1	P15382	129 aa		10.14	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms