RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 IL17DQ8TAD2 202 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 EXTL1Q92935 676 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 RGMAQ96B86 450 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 C1GALT1C1Q96EU7 318 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 ACO2Q99798 780 aaKnown RBP6.08□□□□□ -1.44
CD44-230ENST00000528922 C11orf54Q9H0W9 315 aaPredicted RBP6.08□□□□□ -1.44
CD44-230ENST00000528922 FBXO34Q9NWN3 711 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 FAM30AQ9NZY2 134 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 POGKQ9P215 609 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 CLCA2Q9UQC9 943 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 PCDHA3Q9Y5H8 950 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 MYO5CQ9NQX4 1742 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 FANCAO15360 1455 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 ERBINQ96RT1 1412 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 SCAPERQ9BY12 1400 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 TRPM1Q7Z4N2 1603 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 IQGAP3Q86VI3 1631 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 PARD3Q8TEW0 1356 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 ZNF335Q9H4Z2 1342 aaPredicted RBP6.07□□□□□ -1.44
CD44-230ENST00000528922 FAM135AQ9P2D6 1515 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 ATP10BO94823 1461 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 DRGXA6NNA5 263 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 GRXCR1A8MXD5 290 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 GOLGA6L6A8MZA4 724 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 NT5C1B-RDH14C9J2C7 533 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 FTLP02792 175 aaPredicted RBP6.07□□□□□ -1.44
CD44-230ENST00000528922 MYBP10242 640 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 SLC6A4P31645 630 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 KRTAP10-2P60368 255 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 NOGQ13253 232 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 CRHR2Q13324 411 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 UBXN2BQ14CS0 331 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 METRNLQ641Q3 311 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 WDR75Q8IWA0 830 aaKnown RBP6.07□□□□□ -1.44
CD44-230ENST00000528922 TTC8Q8TAM2 541 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 PPP1R35Q8TAP8 253 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 RUNDC1Q96C34 613 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 CDK5RAP1Q96SZ6 601 aaKnown RBP6.07□□□□□ -1.44
CD44-230ENST00000528922 NEURL4Q96JN8 1562 aa6.07□□□□□ -1.44
CD44-230ENST00000528922 ZNF644Q9H582 1327 aaPredicted RBP6.06□□□□□ -1.44
CD44-230ENST00000528922 PRRG2O14669 202 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 KIAA0391O15091 583 aaKnown RBP6.06□□□□□ -1.44
CD44-230ENST00000528922 GRM6O15303 877 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 SLC16A6O15403 523 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 POMCP01189 267 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 U2AF1L5P0DN76 240 aaPredicted RBP6.06□□□□□ -1.44
CD44-230ENST00000528922 SLC6A2P23975 617 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 APOBEC3AP31941 199 aaPredicted RBP6.06□□□□□ -1.44
CD44-230ENST00000528922 CHN2P52757 468 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 RRP1P56182 461 aaKnown RBP6.06□□□□□ -1.44
CD44-230ENST00000528922 U2AF1Q01081 240 aaKnown RBP eCLIP6.06□□□□□ -1.44
CD44-230ENST00000528922 MINDY4Q4G0A6 757 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 USP39Q53GS9 565 aaKnown RBP6.06□□□□□ -1.44
CD44-230ENST00000528922 THEMIS2Q5TEJ8 643 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 TMPRSS6Q8IU80 811 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 CGRRF1Q99675 332 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 POLHQ9Y253 713 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 PRAG1Q86YV5 1406 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 NPC1L1Q9UHC9 1359 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 PRDM15P57071 1507 aaPredicted RBP6.06□□□□□ -1.44
CD44-230ENST00000528922 ARHGEF40Q8TER5 1519 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 ARAP3Q8WWN8 1544 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 NCANO14594 1321 aa6.06□□□□□ -1.44
CD44-230ENST00000528922 H3BML4 177 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 F2RL2O00254 374 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 CTNND1O60716 968 aaKnown RBP6.05□□□□□ -1.44
CD44-230ENST00000528922 PRSS23O95084 383 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 AMHP03971 560 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 CD1AP06126 327 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 NHLH2Q02577 135 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 CREMQ03060 361 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 TOB2Q14106 344 aaPredicted RBP6.05□□□□□ -1.44
CD44-230ENST00000528922 FLYWCH1Q4VC44 716 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 PABPC1LQ4VXU2 614 aaKnown RBP6.05□□□□□ -1.44
CD44-230ENST00000528922 SLC4A10Q6U841 1118 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 MED25Q71SY5 747 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 HEATR3Q7Z4Q2 680 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 C1orf210Q8IVY1 113 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 ZBTB34Q8NCN2 500 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 IL17RDQ8NFM7 739 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 PHACTR3Q96KR7 559 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 NEU1Q99519 415 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 POLR3GLQ9BT43 218 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 LRFN3Q9BTN0 628 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 GSTO2Q9H4Y5 243 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 KMT5AQ9NQR1 393 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 CEP72Q9P209 647 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 GABBR1Q9UBS5 961 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 KIAA1210Q9ULL0 1709 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 CDC42BPBQ9Y5S2 1711 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 NR2E3Q9Y5X4 410 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 NINLQ9Y2I6 1382 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 WDR7Q9Y4E6 1490 aa6.05□□□□□ -1.44
CD44-230ENST00000528922 RTEL1-TNFRSF6BF6WH68 1400 aa6.04□□□□□ -1.44
CD44-230ENST00000528922 C1QTNF3-AMACRE9PGA6 284 aa6.04□□□□□ -1.44
CD44-230ENST00000528922 MARCH6O60337 910 aa6.04□□□□□ -1.44
CD44-230ENST00000528922 UBXN7O94888 489 aa6.04□□□□□ -1.44
CD44-230ENST00000528922 MGAT1P26572 445 aa6.04□□□□□ -1.44
CD44-230ENST00000528922 BUD31P41223 144 aaPredicted RBP6.04□□□□□ -1.44
CD44-230ENST00000528922 NRN1LQ496H8 165 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms