RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 HOXD13P35453 343 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 AARSP49588 968 aaKnown RBP eCLIP22.63■■□□□ 1.21
VPS28-203ENST00000524521 YWHAHQ04917 246 aaPredicted RBP22.63■■□□□ 1.21
VPS28-203ENST00000524521 TRIM67Q6ZTA4 783 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 EPM2AIP1Q7L775 607 aaPredicted RBP22.63■■□□□ 1.21
VPS28-203ENST00000524521 GRASPQ7Z6J2 395 aaPredicted RBP22.63■■□□□ 1.21
VPS28-203ENST00000524521 BRSK2Q8IWQ3 736 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 EFCAB13Q8IY85 973 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 PAGE5Q96GU1 130 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 SENP8Q96LD8 212 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 SLC39A2Q9NP94 309 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 RBAKQ9NYW8 714 aaPredicted RBP22.63■■□□□ 1.21
VPS28-203ENST00000524521 SORCS3Q9UPU3 1222 aa22.63■■□□□ 1.21
VPS28-203ENST00000524521 SPTLC1O15269 473 aa22.62■■□□□ 1.21
VPS28-203ENST00000524521 N4BP1O75113 896 aaKnown RBP22.62■■□□□ 1.21
VPS28-203ENST00000524521 PAX3P23760 479 aa22.62■■□□□ 1.21
VPS28-203ENST00000524521 WNT7BP56706 349 aa22.62■■□□□ 1.21
VPS28-203ENST00000524521 TFAMQ00059 246 aaKnown RBP22.62■■□□□ 1.21
VPS28-203ENST00000524521 EHHADHQ08426 723 aa22.62■■□□□ 1.21
VPS28-203ENST00000524521 RTL10Q7L3V2 364 aa22.62■■□□□ 1.21
VPS28-203ENST00000524521 NT5DC4Q86YG4 428 aa22.62■■□□□ 1.21
VPS28-203ENST00000524521 NELFCDQ8IXH7 590 aa22.62■■□□□ 1.21
VPS28-203ENST00000524521 GPD1LQ8N335 351 aa22.62■■□□□ 1.21
VPS28-203ENST00000524521 USP25Q9UHP3 1055 aa22.62■■□□□ 1.21
VPS28-203ENST00000524521 RAPGEFL1Q9UHV5 662 aa22.62■■□□□ 1.21
VPS28-203ENST00000524521 TCHHQ07283 1943 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 PRRG1O14668 218 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 KIAA0391O15091 583 aaKnown RBP22.61■■□□□ 1.21
VPS28-203ENST00000524521 OAZ2O95190 189 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 CPB1P15086 417 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 ATF2P15336 505 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 NTHL1P78549 312 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 TPGS2Q68CL5 300 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 CACTINQ8WUQ7 758 aaKnown RBP22.61■■□□□ 1.21
VPS28-203ENST00000524521 MYADMQ96S97 322 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 CYP4F11Q9HBI6 524 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 GDPD2Q9HCC8 539 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 HPSEQ9Y251 543 aa22.61■■□□□ 1.21
VPS28-203ENST00000524521 TMEM221A6NGB7 291 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 M0R296 226 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 ODC1P11926 461 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 TYMPP19971 482 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 FSHRP23945 695 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 SYKP43405 635 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 SIGLEC14Q08ET2 396 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 MTMR3Q13615 1198 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 OVOS1Q6IE37 1185 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 GET4Q7L5D6 327 aaPredicted RBP22.6■■□□□ 1.21
VPS28-203ENST00000524521 SCFD1Q8WVM8 642 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 PDE11AQ9HCR9 933 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.6■■□□□ 1.212e-7■■■■□ 26
VPS28-203ENST00000524521 HSPBP1Q9NZL4 362 aa22.6■■□□□ 1.21
VPS28-203ENST00000524521 ZNF233A6NK53 670 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 TGFB1I1O43294 461 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 SEC24AO95486 1093 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 LRG1P02750 347 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 TAF6P49848 677 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 NDUFA8P51970 172 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 NUCB2P80303 420 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 ADCY1Q08828 1119 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 HFE2Q6ZVN8 426 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 TCEAL8Q8IYN2 117 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 FSIP1Q8NA03 581 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 OXCT2Q9BYC2 517 aaPredicted RBP22.59■■□□□ 1.21
VPS28-203ENST00000524521 KCNK12Q9HB15 430 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 HCFC1R1Q9NWW0 138 aa22.59■■□□□ 1.21
VPS28-203ENST00000524521 AFF4Q9UHB7 1163 aaKnown RBP22.59■■□□□ 1.21
VPS28-203ENST00000524521 DOCK6Q96HP0 2047 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 UBE4BO95155 1302 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 TECTAO75443 2155 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 ARHGEF37A1IGU5 675 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 CYB561D2O14569 222 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 CLIC2O15247 247 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 KLRC4O43908 158 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 OR4Q2P0C623 313 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 RNF19BQ6ZMZ0 732 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 CBWD2Q8IUF1 395 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 UBALD2Q8IYN6 164 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 RDH13Q8NBN7 331 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 PBXIP1Q96AQ6 731 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 SMOC2Q9H3U7 446 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 KIAA1586Q9HCI6 787 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 AGPAT3Q9NRZ7 376 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 EXOC1Q9NV70 894 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 DNMT3BQ9UBC3 853 aaKnown RBP22.58■■□□□ 1.21
VPS28-203ENST00000524521 AGAP1Q9UPQ3 857 aa22.58■■□□□ 1.21
VPS28-203ENST00000524521 SCN1AP35498 2009 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 FAM237AA0A1B0GTK4 181 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 A0A1W2PQ27 194 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 A0A1W2PQ64 194 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 A0A1W2PQD8 194 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 OR6C75A6NL08 312 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 ITGB3P05106 788 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 POU2F2P09086 479 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 LAMP2P13473 410 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 KMT5BQ4FZB7 885 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 HS2ST1Q7LGA3 356 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 METTL23Q86XA0 190 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 CSGALNACT2Q8N6G5 542 aa22.57■■□□□ 1.2
VPS28-203ENST00000524521 FAM84AQ96KN4 292 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms