RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 DNAJB1P25685 340 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 PBX1P40424 430 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 UBASH3AP57075 661 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 NR1I3Q14994 352 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 DUOXA2Q1HG44 320 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 C9orf57Q5W0N0 161 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 KRT39Q6A163 491 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 DPY19L2P1Q6NXN4 242 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 DDX53Q86TM3 631 aaKnown RBP16.5■□□□□ 0.23
LSM1-203ENST00000520755 LMO3Q8TAP4 145 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 MYLIPQ8WY64 445 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 SEMA4DQ92854 862 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 GAS2L1Q99501 681 aaPredicted RBP16.5■□□□□ 0.23
LSM1-203ENST00000520755 CDX2Q99626 313 aaPredicted RBP16.5■□□□□ 0.23
LSM1-203ENST00000520755 VN1R3Q9BXE9 311 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 PUF60Q9UHX1 559 aaKnown RBP16.5■□□□□ 0.23
LSM1-203ENST00000520755 COQ4Q9Y3A0 265 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 TMEM189-UBE2V1I3L0A0 370 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 I3L4J1 428 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 STX10O60499 249 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 HLA-DRAP01903 254 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 ITGB3P05106 788 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 KRT19P08727 400 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 IGFBP4P22692 258 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 POLR2BP30876 1174 aaKnown RBP16.49■□□□□ 0.23
LSM1-203ENST00000520755 KLK7P49862 253 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 AP3M2P53677 418 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 UBE3AQ05086 875 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 KCNMA1Q12791 1236 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 FUT10Q6P4F1 479 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 VPS52Q8N1B4 723 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 ELMO3Q96BJ8 720 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 GUCD1Q96NT3 240 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 LMAN2LQ9H0V9 348 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 TLR9Q9NR96 1032 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 MTMR10Q9NXD2 777 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 LZTS1Q9Y250 596 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 SIK3Q9Y2K2 1263 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 NUB1Q9Y5A7 615 aa16.49■□□□□ 0.23
LSM1-203ENST00000520755 SF3B1O75533 1304 aaKnown RBP eCLIP16.48■□□□□ 0.238e-6■■■■■ 107
LSM1-203ENST00000520755 ANO9A1A5B4 782 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 GTPBP10A4D1E9 387 aaKnown RBP16.48■□□□□ 0.23
LSM1-203ENST00000520755 PES1O00541 588 aaKnown RBP16.48■□□□□ 0.23
LSM1-203ENST00000520755 P4HA2O15460 535 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 N4BP1O75113 896 aaKnown RBP16.48■□□□□ 0.23
LSM1-203ENST00000520755 CST3P01034 146 aaPredicted RBP16.48■□□□□ 0.23
LSM1-203ENST00000520755 CA8P35219 290 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 BRCC3P46736 316 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 ZNF75DP51815 510 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 PLCB2Q00722 1185 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 APBA1Q02410 837 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 BIRC3Q13489 604 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 CAMK1Q14012 370 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 ADGRE1Q14246 886 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 PTPROQ16827 1216 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 CD300LGQ6UXG3 332 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 MICAL1Q8TDZ2 1067 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 MRPL38Q96DV4 380 aaKnown RBP16.48■□□□□ 0.23
LSM1-203ENST00000520755 B3GALT6Q96L58 329 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 ERGIC2Q96RQ1 377 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 CRACR2AQ9BSW2 395 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 GPR62Q9BZJ7 368 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 XYLT2Q9H1B5 865 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 SIX2Q9NPC8 291 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 ENTPD7Q9NQZ7 604 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 GCNT4Q9P109 453 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 ITGA11Q9UKX5 1188 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 AGAP1Q9UPQ3 857 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 R3HCC1Q9Y3T6 440 aaKnown RBP16.48■□□□□ 0.23
LSM1-203ENST00000520755 TRANK1O15050 2925 aa16.48■□□□□ 0.23
LSM1-203ENST00000520755 PIRO00625 290 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 PHACTR2O75167 634 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 TPM2P07951 284 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 SLC9A1P19634 815 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 IRS1P35568 1242 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 PIK3CAP42336 1068 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 ERVFC1P60507 584 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 UBXN1Q04323 297 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 NCOA4Q13772 614 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 FAM171A1Q5VUB5 890 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 PLPP4Q5VZY2 271 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 TAS1R1Q7RTX1 841 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 TMC7Q7Z402 723 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 FBXL13Q8NEE6 735 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 TCF25Q9BQ70 676 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 PI4K2AQ9BTU6 479 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 HERC2P3Q9BVR0 1158 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 INTS2Q9H0H0 1204 aaKnown RBP16.47■□□□□ 0.23
LSM1-203ENST00000520755 ZBP1Q9H171 429 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 PCDHGC5Q9Y5F6 944 aa16.47■□□□□ 0.23
LSM1-203ENST00000520755 C2CD2LO14523 706 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 EPHB6O15197 1021 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 TRAPPC3O43617 180 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 SOD2P04179 222 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 FOSL2P15408 326 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 PON1P27169 355 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 MYL6P60660 151 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 RBP5P82980 135 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 ELAVL2Q12926 359 aaKnown RBP16.46■□□□□ 0.23
LSM1-203ENST00000520755 SYCP1Q15431 976 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms