RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ASNSD1Q9NWL6 643 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 MGRN1O60291 552 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 PHF2O75151 1096 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 ARP10275 920 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 SHMT1P34896 483 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 PCYT1AP49585 367 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 FAM102AQ5T9C2 384 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-213ENST00000514442 NBPF12Q5TAG4 269 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-213ENST00000514442 GJB7Q6PEY0 223 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 SLC30A10Q6XR72 485 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 JAMLQ86YT9 394 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 BBS5Q8N3I7 341 aa13.83□□□□□ -0.2
TCOF1-213ENST00000514442 PRPF31Q8WWY3 499 aaKnown RBP13.83□□□□□ -0.2
TCOF1-213ENST00000514442 FAM237AA0A1B0GTK4 181 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 BNIP3LO60238 219 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 PDIK1LQ8N165 341 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 HIPK4Q8NE63 616 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 CPA5Q8WXQ8 436 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 STRIP2Q9ULQ0 834 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 SIGLEC1Q9BZZ2 1709 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 SDC4P31431 198 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 BLMHQ13867 455 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 STAT4Q14765 748 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 GRIK5Q16478 980 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 ZNF662Q6ZS27 426 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 CDR2LQ86X02 465 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-213ENST00000514442 C1orf54Q8WWF1 131 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 CLMNQ96JQ2 1002 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 ABCF3Q9NUQ8 709 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 PRKAG2Q9UGJ0 569 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 ATG16L1Q676U5 607 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 SNF8Q96H20 258 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 ACAP3Q96P50 834 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 UBN1Q9NPG3 1134 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 IPO11Q9UI26 975 aaKnown RBP13.82□□□□□ -0.2
TCOF1-213ENST00000514442 FAM47DPA6NHR8 397 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 KCNJ2P63252 427 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 SFSWAPQ12872 951 aaKnown RBP13.82□□□□□ -0.2
TCOF1-213ENST00000514442 CENPUQ71F23 418 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 THEM5Q8N1Q8 247 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 MAGEB18Q96M61 343 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 SMARCAD1Q9H4L7 1026 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 GPRC5CQ9NQ84 441 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 AGAP1Q9UPQ3 857 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 TSC22D4Q9Y3Q8 395 aa13.82□□□□□ -0.2
TCOF1-213ENST00000514442 UBR1Q8IWV7 1749 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 C6orf222P0C671 652 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-213ENST00000514442 CYP11B2P19099 503 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 RFX1P22670 979 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 QPCTQ16769 361 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 KLHDC7AQ5VTJ3 777 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 EPS8L3Q8TE67 593 aaKnown RBP13.81□□□□□ -0.2
TCOF1-213ENST00000514442 SYN2Q92777 582 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-213ENST00000514442 TTC25Q96NG3 672 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 TRIM56Q9BRZ2 755 aaKnown RBP13.81□□□□□ -0.2
TCOF1-213ENST00000514442 RNPEPL1Q9HAU8 725 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 CYP39A1Q9NYL5 469 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 TMED10P49755 219 aaKnown RBP13.81□□□□□ -0.2
TCOF1-213ENST00000514442 TSTA3Q13630 321 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-213ENST00000514442 SMAD1Q15797 465 aaKnown RBP13.81□□□□□ -0.2
TCOF1-213ENST00000514442 EDRF1Q3B7T1 1238 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 EIF1ADQ8N9N8 165 aaKnown RBP13.81□□□□□ -0.2
TCOF1-213ENST00000514442 ACTRT1Q8TDG2 376 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 ATXN2LQ8WWM7 1075 aaKnown RBP13.81□□□□□ -0.2
TCOF1-213ENST00000514442 PI4K2AQ9BTU6 479 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 TIPINQ9BVW5 301 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 SMYD3Q9H7B4 428 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 POLIQ9UNA4 740 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 SMG5Q9UPR3 1016 aaKnown RBP13.81□□□□□ -0.2
TCOF1-213ENST00000514442 FESP07332 822 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 MEA1Q16626 185 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 MEI1Q5TIA1 1274 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 BTNL9Q6UXG8 535 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 ZFPM1Q8IX07 1006 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 ANKRD13AQ8IZ07 590 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 SERPINB12Q96P63 405 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 STK33Q9BYT3 514 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 NFIBO00712 420 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 BMP6P22004 513 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 GSTT1P30711 240 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 GALCP54803 685 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 NME3Q13232 169 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 ERMARDQ5T6L9 678 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 ENOSF1Q7L5Y1 443 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 DEPDC1BQ8WUY9 529 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 CATSPER2Q96P56 530 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 NPHS2Q9NP85 383 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 AIPL1Q9NZN9 384 aa13.81□□□□□ -0.2
TCOF1-213ENST00000514442 DNM1LO00429 736 aa13.8□□□□□ -0.2
TCOF1-213ENST00000514442 CDH16O75309 829 aa13.8□□□□□ -0.2
TCOF1-213ENST00000514442 GH1P01241 217 aa13.8□□□□□ -0.2
TCOF1-213ENST00000514442 ERVK-9P63128 1117 aa13.8□□□□□ -0.2
TCOF1-213ENST00000514442 TMC3Q7Z5M5 1100 aa13.8□□□□□ -0.2
TCOF1-213ENST00000514442 SLC26A7Q8TE54 656 aa13.8□□□□□ -0.2
TCOF1-213ENST00000514442 DRC3Q9H069 523 aa13.8□□□□□ -0.2
TCOF1-213ENST00000514442 KCND2Q9NZV8 630 aa13.8□□□□□ -0.2
TCOF1-213ENST00000514442 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.8□□□□□ -0.2
TCOF1-213ENST00000514442 PFASO15067 1338 aa13.8□□□□□ -0.2
TCOF1-213ENST00000514442 PDE5AO76074 875 aa13.8□□□□□ -0.2
TCOF1-213ENST00000514442 CELF2O95319 508 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms