RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 MAMDC4Q6UXC1 1216 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 ZNF783Q6ZMS7 281 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 SPOCD1Q6ZMY3 1216 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 Q6ZSN1 163 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 PCSK9Q8NBP7 692 aaKnown RBP5□□□□□ -1.61
HMGB1P28-201ENST00000507778 SLC17A8Q8NDX2 589 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 Q8TCH9 128 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 DDX17Q92841 729 aaKnown RBP5□□□□□ -1.61
HMGB1P28-201ENST00000507778 SCAMP4Q969E2 229 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 MNTQ99583 582 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 IMPG2Q9BZV3 1241 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 UNKQ9C0B0 810 aaKnown RBP5□□□□□ -1.61
HMGB1P28-201ENST00000507778 REXO4Q9GZR2 422 aaKnown RBP5□□□□□ -1.61
HMGB1P28-201ENST00000507778 GPR35Q9HC97 309 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 SACM1LQ9NTJ5 587 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 SRRDQ9UH36 339 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 AFF4Q9UHB7 1163 aaKnown RBP5□□□□□ -1.61
HMGB1P28-201ENST00000507778 GOLGA6L6A8MZA4 724 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 KPNA5O15131 536 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 ABHD16AO95870 558 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 CHEK2O96017 543 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 LDHAP00338 332 aaKnown RBP4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 CKBP12277 381 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 ACO1P21399 889 aaKnown RBP4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 CASP5P51878 434 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 ZNF135P52742 658 aaPredicted RBP4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 RABGGTBP53611 331 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 MXRA7P84157 204 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 ZNF543Q08ER8 600 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 TOGARAM2Q6ZUX3 1019 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 USP37Q86T82 979 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 SESTD1Q86VW0 696 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 DNERQ8NFT8 737 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 NUP133Q8WUM0 1156 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 NMD3Q96D46 503 aaKnown RBP4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 KLHL32Q96NJ5 620 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 RBM15Q96T37 977 aaKnown RBP eCLIP4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 GPR87Q9BY21 358 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 SIK2Q9H0K1 926 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 PNPLA8Q9NP80 782 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 STK32BQ9NY57 414 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 DAAM1Q9Y4D1 1078 aa4.99□□□□□ -1.61
HMGB1P28-201ENST00000507778 RASA4BC9J798 803 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 RASA4O43374 803 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 PRSS23O95084 383 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 UNC5CO95185 931 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 IL18RAPO95256 599 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 SERPINB3P29508 390 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 HIBADHP31937 336 aaKnown RBP4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 MAN2A2P49641 1150 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 NHLH2Q02577 135 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 SLC13A2Q13183 592 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 LONRF3Q496Y0 759 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 AMOTQ4VCS5 1084 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 SLC44A4Q53GD3 710 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 CRB2Q5IJ48 1285 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 NOMO2Q5JPE7 1267 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 C1QL3Q5VWW1 255 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 LMBRD2Q68DH5 695 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 NAIF1Q69YI7 327 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 SYT12Q8IV01 421 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 ZFPM1Q8IX07 1006 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 SPICE1Q8N0Z3 855 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 ZNF808Q8N4W9 903 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 TMIEQ8NEW7 156 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 MORC4Q8TE76 937 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 MSLNLQ96KJ4 702 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 RIPOR3Q96MK2 946 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 DPH1Q9BZG8 443 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 TINAGL1Q9GZM7 467 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 STARD7Q9NQZ5 370 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 TAGLN3Q9UI15 199 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 DMTF1Q9Y222 760 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 PLEKHM1Q9Y4G2 1056 aa4.98□□□□□ -1.61
HMGB1P28-201ENST00000507778 KLRG2A4D1S0 409 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 TRIM43BA6NCK2 446 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 POM121BA6NF01 834 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 LEFTY2O00292 366 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 PARP1P09874 1014 aaKnown RBP4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 HOXA5P20719 270 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 GCSHP23434 173 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 STT3AP46977 705 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 SCNN1GP51170 649 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 POU6F2P78424 691 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 CRHR2Q13324 411 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 CTBP1Q13363 440 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 RAB32Q13637 225 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 CNGB1Q14028 1251 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 DAG1Q14118 895 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 ICAM4Q14773 271 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 C3orf38Q5JPI3 329 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 FAM102AQ5T9C2 384 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 TSHZ3Q63HK5 1081 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 Q6ZRM9 215 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 HTR3DQ70Z44 454 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 RHOT2Q8IXI1 618 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 OR2C3Q8N628 320 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 DNAJC5GQ8N7S2 189 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 DEPTORQ8TB45 409 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 EDAQ92838 391 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms