RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 AARSP49588 968 aaKnown RBP eCLIP12.55□□□□□ -0.49e-6■□□□□ 8.7
HMGCS1-204ENST00000507293 ZNF131P52739 623 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 KYAT1Q16773 422 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 FAM78AQ5JUQ0 283 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 CYP4A22Q5TCH4 519 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 IQCEQ6IPM2 695 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 ZC3H14Q6PJT7 736 aaKnown RBP12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 DSTYKQ6XUX3 929 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 MAML2Q8IZL2 1156 aaPredicted RBP12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 RAD54LQ92698 747 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 FAM212AQ96EL1 285 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 ZNF512Q96ME7 567 aaPredicted RBP12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 PGLYRP2Q96PD5 576 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 MSTO1Q9BUK6 570 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 OSBPL6Q9BZF3 934 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 SEMA4AQ9H3S1 761 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 RPF1Q9H9Y2 349 aaKnown RBP12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 PARVGQ9HBI0 331 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 ZFP14Q9HCL3 533 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 HEBP1Q9NRV9 189 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 MAFFQ9ULX9 164 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 YIPF1Q9Y548 306 aa12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 RIF1Q5UIP0 2472 aaKnown RBP12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 PTPRZ1P23471 2315 aaPredicted RBP12.55□□□□□ -0.4
HMGCS1-204ENST00000507293 A0A0B4J269 797 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 PPEF2O14830 753 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 TRAK2O60296 914 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 MOSPD3O75425 235 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 MICAL2O94851 1124 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 OAZ2O95190 189 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 VNN2O95498 520 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 SCP2P22307 547 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 TARSP26639 723 aaKnown RBP12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 NMT1P30419 496 aaKnown RBP12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 SF3A1Q15459 793 aaKnown RBP12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 JADE1Q6IE81 842 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 SLC39A4Q6P5W5 647 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 BRAPQ7Z569 592 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 USP37Q86T82 979 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 LEMD2Q8NC56 503 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 BEST2Q8NFU1 509 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 DNASE1L2Q92874 299 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 ZSWIM3Q96MP5 696 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 ASB16Q96NS5 453 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 CRISPLD1Q9H336 500 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 ASAH2Q9NR71 780 aa12.54□□□□□ -0.4
HMGCS1-204ENST00000507293 VPS37CA5D8V6 355 aaPredicted RBP12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 OR6C75A6NL08 312 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 LAMTOR5O43504 91 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 ADRB2P07550 413 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 NFICP08651 508 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 MAGEA9P43362 315 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 EPHA5P54756 1037 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 TEAD2Q15562 447 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 SPATA1Q5VX52 437 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 OVOS1Q6IE37 1185 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 VITQ6UXI7 678 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 MAP4K3Q8IVH8 894 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 ZSCAN18Q8TBC5 510 aaPredicted RBP12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 LARP4BQ92615 738 aaKnown RBP12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 SMARCD2Q92925 531 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 TSPAN18Q96SJ8 248 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 FIZ1Q96SL8 496 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 TRMT61BQ9BVS5 477 aaKnown RBP12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 OXCT2Q9BYC2 517 aaPredicted RBP12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 BRD9Q9H8M2 597 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 CPSF3Q9UKF6 684 aaKnown RBP12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 NCANO14594 1321 aa12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 KIF26AQ9ULI4 1882 aaPredicted RBP12.53□□□□□ -0.4
HMGCS1-204ENST00000507293 SHISA7A6NL88 538 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 TISP43B9A030 160 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 ANKRD63C9JTQ0 380 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 ODC1P11926 461 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 TYMPP19971 482 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 GDI1P31150 447 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 VIPR2P41587 438 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 ACOT2P49753 483 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 GTF2BQ00403 316 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 DUSP4Q13115 394 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 GPR17Q13304 367 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 PLD1Q13393 1074 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 TMEM132DQ14C87 1099 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 ZC2HC1CQ53FD0 456 aaPredicted RBP12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 C9orf57Q5W0N0 161 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 ZNF852Q6ZMS4 543 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 CD302Q8IX05 232 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 SHKBP1Q8TBC3 707 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 CLDN23Q96B33 292 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 SENP8Q96LD8 212 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 TMEM209Q96SK2 561 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 NELL2Q99435 816 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 LRRC3Q9BY71 257 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 CCSER1Q9C0I3 900 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 DNAJC25Q9H1X3 360 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 FBXO4Q9UKT5 387 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 MRPS17Q9Y2R5 130 aaKnown RBP12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 OBSL1O75147 1896 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 DENND4CQ5VZ89 1909 aa12.52□□□□□ -0.41
HMGCS1-204ENST00000507293 GVINP1Q7Z2Y8 2422 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms