RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TRIM75PA6NK02 468 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 H3BQ06 376 aaPredicted RBP4.85□□□□□ -1.63
USP54-217ENST00000498213 TIMP1P01033 207 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 ZNF853P0CG23 659 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 CYP2C19P33261 490 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 KCNJ4P48050 445 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 HERVK_113P62684 666 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 PPIGQ13427 754 aaKnown RBP eCLIP4.85□□□□□ -1.63
USP54-217ENST00000498213 WDR43Q15061 677 aaKnown RBP eCLIP4.85□□□□□ -1.63
USP54-217ENST00000498213 TRIM61Q5EBN2 209 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 MFSD14CQ5VZR4 134 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 CPZQ66K79 652 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 CCDC174Q6PII3 467 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 OTOP2Q7RTS6 562 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 KIAA2013Q8IYS2 634 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 GSTCDQ8NEC7 633 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 TRPV1Q8NER1 839 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 SLC7A14Q8TBB6 771 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 NKD2Q969F2 451 aaPredicted RBP4.85□□□□□ -1.63
USP54-217ENST00000498213 AJUBAQ96IF1 538 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 MRIQ9BWK5 157 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 DEF6Q9H4E7 631 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 MYH16Q9H6N6 1097 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 ZSWIM4Q9H7M6 989 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 SMURF1Q9HCE7 757 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 FLRT1Q9NZU1 646 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 PPP4R1LQ9P1A2 415 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.85□□□□□ -1.63
USP54-217ENST00000498213 ST6GALNAC2Q9UJ37 374 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 SLC45A1Q9Y2W3 748 aa4.85□□□□□ -1.63
USP54-217ENST00000498213 TECTAO75443 2155 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 IL16Q14005 1332 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.84□□□□□ -1.63
USP54-217ENST00000498213 B4E1Z4 1266 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 IGSF3O75054 1194 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 NPTXRO95502 500 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 IL18BPO95998 194 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 FSHBP01225 129 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 CA3P07451 260 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 SLC5A1P13866 664 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 AOAHP28039 575 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 AVPR2P30518 371 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 MC4RP32245 332 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 CSF2RBP32927 897 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 IGHMBP2P38935 993 aaKnown RBP4.84□□□□□ -1.63
USP54-217ENST00000498213 RGS2P41220 211 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 GCLCP48506 637 aaPredicted RBP4.84□□□□□ -1.63
USP54-217ENST00000498213 RRADP55042 308 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 TMEM132BQ14DG7 1078 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 FKBP1CQ5VVH2 108 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 MFSD5Q6N075 450 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 PSRC1Q6PGN9 363 aaPredicted RBP4.84□□□□□ -1.63
USP54-217ENST00000498213 KSR2Q6VAB6 950 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 BMP8AQ7Z5Y6 402 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 DDX53Q86TM3 631 aaKnown RBP4.84□□□□□ -1.63
USP54-217ENST00000498213 CCAR1Q8IX12 1150 aaKnown RBP4.84□□□□□ -1.63
USP54-217ENST00000498213 IGSF22Q8N9C0 903 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 SLC16A11Q8NCK7 471 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 GIMAP8Q8ND71 665 aaPredicted RBP4.84□□□□□ -1.63
USP54-217ENST00000498213 SOCS4Q8WXH5 440 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 EDAQ92838 391 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 LRRC37BQ96QE4 947 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 LMF1Q96S06 567 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 STK31Q9BXU1 1019 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 UPF3BQ9BZI7 483 aaKnown RBP4.84□□□□□ -1.63
USP54-217ENST00000498213 NCOA5Q9HCD5 579 aaKnown RBP4.84□□□□□ -1.63
USP54-217ENST00000498213 KCNH7Q9NS40 1196 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 GALNT8Q9NY28 637 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 CHPF2Q9P2E5 772 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 FBXO10Q9UK96 956 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 AGTPBP1Q9UPW5 1226 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 AFG3L2Q9Y4W6 797 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 WDR87Q6ZQQ6 2873 aa4.84□□□□□ -1.63
USP54-217ENST00000498213 DMDP11532 3685 aa4.84□□□□□ -1.64
USP54-217ENST00000498213 A0A0G2JMZ2 1700 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 CEP250Q9BV73 2442 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 ZNF521Q96K83 1311 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 KIF16BQ96L93 1317 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 TCRBV16S1A1N1A0A5B0 115 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 PLD2O14939 933 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 FOXP2O15409 715 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 FGBP02675 491 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 C4BPAP04003 597 aaKnown RBP4.83□□□□□ -1.64
USP54-217ENST00000498213 MMEP08473 750 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 ADCY8P40145 1251 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 NBL1P41271 181 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 TCP10Q12799 353 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 LRRC41Q15345 812 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 TMEM177Q53S58 311 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 HS1BP3Q53T59 392 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 HERC4Q5GLZ8 1057 aaPredicted RBP4.83□□□□□ -1.64
USP54-217ENST00000498213 ZMAT1Q5H9K5 638 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 LURAP1LQ8IV03 231 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 LILRB2Q8N423 598 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 CALML6Q8TD86 181 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 UBXN4Q92575 508 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 USP6NLQ92738 828 aa4.83□□□□□ -1.64
USP54-217ENST00000498213 ERCC4Q92889 916 aaPredicted RBP4.83□□□□□ -1.64
USP54-217ENST00000498213 DVL3Q92997 716 aaPredicted RBP4.83□□□□□ -1.64
USP54-217ENST00000498213 EDC3Q96F86 508 aaKnown RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms