RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 LRRC52Q8N7C0 313 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 FBXL13Q8NEE6 735 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 ANKRD20A12PQ8NF67 263 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 SEMA4DQ92854 862 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 PI4K2AQ9BTU6 479 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 VN1R3Q9BXE9 311 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 GPR62Q9BZJ7 368 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 PUF60Q9UHX1 559 aaKnown RBP12.81□□□□□ -0.36
CUX1-210ENST00000497815 SF3B1O75533 1304 aaKnown RBP eCLIP12.81□□□□□ -0.365e-6■■■■■ 56.8
CUX1-210ENST00000497815 KPNA7A9QM74 516 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 C2CD2LO14523 706 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 TRAPPC3O43617 180 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 N4BP1O75113 896 aaKnown RBP12.8□□□□□ -0.36
CUX1-210ENST00000497815 LRRN2O75325 713 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 TPM2P07951 284 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 DNAJB1P25685 340 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 PNPLA4P41247 253 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 GRIN2CQ14957 1233 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 ZNF699Q32M78 642 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 MIIPQ5JXC2 388 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 SPOPLQ6IQ16 392 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 DDX53Q86TM3 631 aaKnown RBP12.8□□□□□ -0.36
CUX1-210ENST00000497815 VPS52Q8N1B4 723 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 SPPL3Q8TCT6 385 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 POF1BQ8WVV4 589 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 AUTS2Q8WXX7 1259 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 ANP32EQ9BTT0 268 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 IMPG2Q9BZV3 1241 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 NDST4Q9H3R1 872 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 PRDM12Q9H4Q4 367 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 RAB20Q9NX57 234 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 NXF1Q9UBU9 619 aaKnown RBP12.8□□□□□ -0.36
CUX1-210ENST00000497815 LIMA1Q9UHB6 759 aaKnown RBP12.8□□□□□ -0.36
CUX1-210ENST00000497815 TIMM13Q9Y5L4 95 aaPredicted RBP12.8□□□□□ -0.36
CUX1-210ENST00000497815 SNX9Q9Y5X1 595 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 NLRC5Q86WI3 1866 aa12.8□□□□□ -0.36
CUX1-210ENST00000497815 TMEM265A0A087WTH1 108 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 CYB561D2O14569 222 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 TKTP29401 623 aaKnown RBP12.79□□□□□ -0.36
CUX1-210ENST00000497815 ATICP31939 592 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 COPB1P53618 953 aaKnown RBP12.79□□□□□ -0.36
CUX1-210ENST00000497815 TNNC1P63316 161 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 CETN1Q12798 172 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 LRMPQ12912 555 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 ELAVL2Q12926 359 aaKnown RBP12.79□□□□□ -0.36
CUX1-210ENST00000497815 SGSM1Q2NKQ1 1148 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 WDR72Q3MJ13 1102 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 KIAA1841Q6NSI8 718 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 SCARA5Q6ZMJ2 495 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 Q7L0L9 218 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 GAS2L3Q86XJ1 694 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 CCDC150Q8NCX0 1101 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 MICAL1Q8TDZ2 1067 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 SUSD3Q96L08 255 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 SENP8Q96LD8 212 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 MMS19Q96T76 1030 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 TCF25Q9BQ70 676 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 CRACR2AQ9BSW2 395 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 XYLT2Q9H1B5 865 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 RBSNQ9H1K0 784 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 ENTPD7Q9NQZ7 604 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 POLIQ9UNA4 740 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 PCDHGC5Q9Y5F6 944 aa12.79□□□□□ -0.36
CUX1-210ENST00000497815 ASS1P00966 412 aaKnown RBP12.78□□□□□ -0.36
CUX1-210ENST00000497815 SERPINC1P01008 464 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 SOD2P04179 222 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 URODP06132 367 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 ODC1P11926 461 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 AARSP49588 968 aaKnown RBP eCLIP12.78□□□□□ -0.362e-6■■■■■ 41.2
CUX1-210ENST00000497815 ERVFC1P60507 584 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 NOP14P78316 857 aaKnown RBP12.78□□□□□ -0.36
CUX1-210ENST00000497815 USP41Q3LFD5 358 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 ZNF667Q5HYK9 610 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 WDR44Q5JSH3 913 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 RTP2Q5QGT7 225 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 PLPP4Q5VZY2 271 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 PRSS55Q6UWB4 352 aaPredicted RBP12.78□□□□□ -0.36
CUX1-210ENST00000497815 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.78□□□□□ -0.36
CUX1-210ENST00000497815 TMC7Q7Z402 723 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 RIN2Q8WYP3 895 aaPredicted RBP12.78□□□□□ -0.36
CUX1-210ENST00000497815 TTPALQ9BTX7 342 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 HERC2P3Q9BVR0 1158 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 INTS2Q9H0H0 1204 aaKnown RBP12.78□□□□□ -0.36
CUX1-210ENST00000497815 ZBP1Q9H171 429 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 TLR9Q9NR96 1032 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 GCNT4Q9P109 453 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 PCDHB8Q9UN66 801 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 LZTS1Q9Y250 596 aa12.78□□□□□ -0.36
CUX1-210ENST00000497815 LAMA2P24043 3122 aaKnown RBP12.78□□□□□ -0.36
CUX1-210ENST00000497815 COL4A4P53420 1690 aaPredicted RBP12.77□□□□□ -0.36
CUX1-210ENST00000497815 PLXNA4Q9HCM2 1894 aa12.77□□□□□ -0.37
CUX1-210ENST00000497815 M0QZQ0 153 aa12.77□□□□□ -0.37
CUX1-210ENST00000497815 P4HA2O15460 535 aa12.77□□□□□ -0.37
CUX1-210ENST00000497815 LPXNO60711 386 aa12.77□□□□□ -0.37
CUX1-210ENST00000497815 HUS1O60921 280 aa12.77□□□□□ -0.37
CUX1-210ENST00000497815 CXCL14O95715 111 aa12.77□□□□□ -0.37
CUX1-210ENST00000497815 EFEMP2O95967 443 aa12.77□□□□□ -0.37
CUX1-210ENST00000497815 FGFR3P22607 806 aa12.77□□□□□ -0.37
CUX1-210ENST00000497815 IRS1P35568 1242 aa12.77□□□□□ -0.37
CUX1-210ENST00000497815 RAP1GAPP47736 663 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms