RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CALCOCO1Q9P1Z2 691 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 LIMCH1Q9UPQ0 1083 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 POLHQ9Y253 713 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 MAP3K2Q9Y2U5 619 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 CHST2Q9Y4C5 530 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 LRP6O75581 1613 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 PLA2R1Q13018 1463 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 FAM135BQ49AJ0 1406 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 PNPLA7Q6ZV29 1317 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 A0A087X1B8 175 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 E2F8A0AVK6 867 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 UNC119BA6NIH7 251 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 GRM6O15303 877 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 ALDH1L1O75891 902 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 CD1AP06126 327 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 GCSHP23434 173 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 BLOC1S1P78537 153 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 HSD11B2P80365 405 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 FAM189BP81408 668 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 TAP1Q03518 808 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 DPTQ07507 201 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 ZNF844Q08AG5 666 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 BEAN1Q3B7T3 259 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 C3orf36Q3SXR2 165 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 PREPLQ4J6C6 727 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-208ENST00000490788 UTP14CQ5TAP6 766 aaKnown RBP2.79□□□□□ -1.96
HMGB1-208ENST00000490788 IGFL4Q6B9Z1 124 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 CMTR2Q8IYT2 770 aaKnown RBP2.79□□□□□ -1.96
HMGB1-208ENST00000490788 ULK2Q8IYT8 1036 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 FAM43AQ8N2R8 423 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 AMER2Q8N7J2 671 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 C3orf20Q8ND61 904 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 LARP4BQ92615 738 aaKnown RBP2.79□□□□□ -1.96
HMGB1-208ENST00000490788 MED15Q96RN5 788 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 ZSWIM1Q9BR11 485 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 ALOXE3Q9BYJ1 711 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 GALNT9Q9HCQ5 603 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 KLHL11Q9NVR0 708 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 TBCCD1Q9NVR7 557 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 DDX56Q9NY93 547 aaKnown RBP2.79□□□□□ -1.96
HMGB1-208ENST00000490788 FAM30AQ9NZY2 134 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 ANKFY1Q9P2R3 1169 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 IP6K2Q9UHH9 426 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 SLC23A1Q9UHI7 598 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 ING1Q9UK53 422 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-208ENST00000490788 DMTF1Q9Y222 760 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 ANKRD6Q9Y2G4 727 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 IPPQ9Y573 584 aa2.79□□□□□ -1.96
HMGB1-208ENST00000490788 SUPT6HQ7KZ85 1726 aaKnown RBP2.79□□□□□ -1.96
HMGB1-208ENST00000490788 FRMPD1Q5SYB0 1578 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 EFCAB5A4FU69 1503 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 DENND4BO75064 1496 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-208ENST00000490788 BLMP54132 1417 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-208ENST00000490788 TNS2Q63HR2 1409 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 AATKQ6ZMQ8 1374 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 CENPVL1A0A0U1RR11 272 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 TMEM200CA6NKL6 621 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 FZD9O00144 591 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 SLC16A6O15403 523 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 AGFG2O95081 481 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 CFIP05156 583 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 PDGFRBP09619 1106 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 HKR1P10072 659 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 ITGAMP11215 1152 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 PDCP20941 246 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 FGFR4P22455 802 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 NR4A1P22736 598 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 SLC6A2P23975 617 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 CXADRP78310 365 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 ATP8B2P98198 1209 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 PIGFQ07326 219 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 TARDBPQ13148 414 aaKnown RBP eCLIP2.78□□□□□ -1.96
HMGB1-208ENST00000490788 ODF1Q14990 250 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 CSRP2Q16527 193 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 ERCC6LQ2NKX8 1250 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 KHDC1Q4VXA5 237 aaKnown RBP2.78□□□□□ -1.96
HMGB1-208ENST00000490788 TMEM240Q5SV17 173 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 DACT2Q5SW24 774 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 ABHD17BQ5VST6 288 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 USP45Q70EL2 814 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 ARHGEF19Q8IW93 802 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 TMEM132CQ8N3T6 1108 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 CPA6Q8N4T0 437 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 IFI44Q8TCB0 444 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 RGMAQ96B86 450 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 MTFMTQ96DP5 389 aaKnown RBP2.78□□□□□ -1.96
HMGB1-208ENST00000490788 HOOK2Q96ED9 719 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 CHFRQ96EP1 664 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 MARS2Q96GW9 593 aaKnown RBP2.78□□□□□ -1.96
HMGB1-208ENST00000490788 MAP3K14Q99558 947 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 VRK1Q99986 396 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-208ENST00000490788 MLST8Q9BVC4 326 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 TEX101Q9BY14 249 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 WDR11Q9BZH6 1224 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 IMPG2Q9BZV3 1241 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 SIK2Q9H0K1 926 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 SERHL2Q9H4I8 314 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 BRD9Q9H8M2 597 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 SLAMF7Q9NQ25 335 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 CASS4Q9NQ75 786 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms