RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 TRIM49CP0CI26 452 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 PAX3P23760 479 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 EEF1GP26641 437 aaKnown RBP11.1□□□□□ -0.63
SKA1-204ENST00000488454 PNPLA4P41247 253 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 GCLMP48507 274 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 SLC11A1P49279 550 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 CLCNKBP51801 687 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 GUCY2FP51841 1108 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 MARSP56192 900 aaKnown RBP11.1□□□□□ -0.63
SKA1-204ENST00000488454 DLG4P78352 724 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 CLDN10P78369 228 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 MYO1EQ12965 1108 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 KCNJ12Q14500 433 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 BMS1Q14692 1282 aaKnown RBP11.1□□□□□ -0.63
SKA1-204ENST00000488454 NAB2Q15742 525 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 UPP1Q16831 310 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 HSP90AA4PQ58FG1 418 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 TCP11X2Q5H9J9 407 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 SV2AQ7L0J3 742 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 TRAPPC11Q7Z392 1133 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 CCDC150Q8NCX0 1101 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 OR5B17Q8NGF7 314 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 FAM200AQ8TCP9 573 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 PLEKHO2Q8TD55 490 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 RABGGTAQ92696 567 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 TMEM169Q96HH4 297 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 GOLGA2P5Q9HBQ8 144 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 TMEM8AQ9HCN3 771 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 STK39Q9UEW8 545 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 MTUS1Q9ULD2 1270 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 AGAP1Q9UPQ3 857 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 AFPP02771 609 aaKnown RBP11.09□□□□□ -0.63
SKA1-204ENST00000488454 C4BPAP04003 597 aaKnown RBP11.09□□□□□ -0.63
SKA1-204ENST00000488454 ITGB3P05106 788 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 PRKCSHP14314 528 aaPredicted RBP11.09□□□□□ -0.63
SKA1-204ENST00000488454 POLR2BP30876 1174 aaKnown RBP11.09□□□□□ -0.63
SKA1-204ENST00000488454 PBX3P40426 434 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 ERVK-21P61565 698 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 SOX4Q06945 474 aaPredicted RBP11.09□□□□□ -0.63
SKA1-204ENST00000488454 KCNH2Q12809 1159 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 MAN2A1Q16706 1144 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 EPC2Q52LR7 807 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 C9orf57Q5W0N0 161 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 KRT39Q6A163 491 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 DSTYKQ6XUX3 929 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 IRF2BP1Q8IU81 584 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 TRIM59Q8IWR1 403 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 DHX40Q8IX18 779 aaKnown RBP11.09□□□□□ -0.63
SKA1-204ENST00000488454 SLC39A11Q8N1S5 342 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 C1orf127Q8N9H9 656 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 KLHL23Q8NBE8 558 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 ARNTL2Q8WYA1 636 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 IGSF21Q96ID5 467 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 ZNF560Q96MR9 790 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 PAAF1Q9BRP4 392 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 TUBGCP2Q9BSJ2 902 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 C17orf80Q9BSJ5 609 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 C11orf84Q9BUA3 381 aaPredicted RBP11.09□□□□□ -0.63
SKA1-204ENST00000488454 IMPG2Q9BZV3 1241 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 CERS4Q9HA82 394 aa11.09□□□□□ -0.63
SKA1-204ENST00000488454 TMEM265A0A087WTH1 108 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 ANO9A1A5B4 782 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 ARHGEF37A1IGU5 675 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 TMEM189-UBE2V1I3L0A0 370 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 PIRO00625 290 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 FGF18O76093 207 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 CST3P01034 146 aaPredicted RBP11.08□□□□□ -0.64
SKA1-204ENST00000488454 PIK3CAP42336 1068 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 TAF6P49848 677 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 MXI1P50539 228 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 MCCD1P59942 119 aaPredicted RBP11.08□□□□□ -0.64
SKA1-204ENST00000488454 PLCB3Q01970 1234 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 PPP3CAQ08209 521 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 ELAVL2Q12926 359 aaKnown RBP11.08□□□□□ -0.64
SKA1-204ENST00000488454 GPM6BQ13491 265 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 NCOA4Q13772 614 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 NCAPHQ15003 741 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 IQCB1Q15051 598 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 SGSM1Q2NKQ1 1148 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 ZACNQ401N2 412 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 SV2CQ496J9 727 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 FILIP1LQ4L180 1135 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 VWA3BQ502W6 1294 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 WDR44Q5JSH3 913 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 C1orf220Q5T0J3 134 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 CDKAL1Q5VV42 579 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 TDRD10Q5VZ19 366 aaKnown RBP11.08□□□□□ -0.64
SKA1-204ENST00000488454 KIAA1841Q6NSI8 718 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 LUZP1Q86V48 1076 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 SCUBE3Q8IX30 993 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 PARP9Q8IXQ6 854 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 LRRC52Q8N7C0 313 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 HASPINQ8TF76 798 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 SLC35C1Q96A29 364 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 HPDLQ96IR7 371 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 ZNF576Q9H609 170 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 CACNG4Q9UBN1 327 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 ADAM28Q9UKQ2 775 aa11.08□□□□□ -0.64
SKA1-204ENST00000488454 SF3B1O75533 1304 aaKnown RBP eCLIP11.08□□□□□ -0.641e-7■■■■■ 172.3
SKA1-204ENST00000488454 PTPRJQ12913 1337 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms