RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 SLC27A3Q5K4L6 730 aa12.93□□□□□ -0.34
COL3A1-206ENST00000487010 PCNX4Q63HM2 1172 aa12.93□□□□□ -0.34
COL3A1-206ENST00000487010 SLC39A4Q6P5W5 647 aa12.93□□□□□ -0.34
COL3A1-206ENST00000487010 FAM13CQ8NE31 585 aa12.93□□□□□ -0.34
COL3A1-206ENST00000487010 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.93□□□□□ -0.34
COL3A1-206ENST00000487010 C10orf82Q8WW14 230 aa12.93□□□□□ -0.34
COL3A1-206ENST00000487010 SLC7A6OSQ96CW6 309 aaPredicted RBP12.93□□□□□ -0.34
COL3A1-206ENST00000487010 SMC6Q96SB8 1091 aa12.93□□□□□ -0.34
COL3A1-206ENST00000487010 KIFC3Q9BVG8 833 aa12.93□□□□□ -0.34
COL3A1-206ENST00000487010 CYP39A1Q9NYL5 469 aa12.93□□□□□ -0.34
COL3A1-206ENST00000487010 SENP1Q9P0U3 644 aa12.93□□□□□ -0.34
COL3A1-206ENST00000487010 UBIAD1Q9Y5Z9 338 aa12.93□□□□□ -0.34
COL3A1-206ENST00000487010 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.93□□□□□ -0.34
COL3A1-206ENST00000487010 RGPD3A6NKT7 1758 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 RGPD4Q7Z3J3 1758 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 DENND3A2RUS2 1198 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 KRT15P19012 456 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 RPA3P35244 121 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 BPIFB4P59827 614 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 AOC3Q16853 763 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 XKR9Q5GH70 373 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 LIN9Q5TKA1 542 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 PLA2G4FQ68DD2 849 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 CDCA2Q69YH5 1023 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 EP400NLQ6ZTU2 488 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 TRMT1LQ7Z2T5 733 aaKnown RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 LONP2Q86WA8 852 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 TEX9Q8N6V9 391 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 LRRC8CQ8TDW0 803 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 STK32AQ8WU08 396 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 POMGNT1Q8WZA1 660 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 GJD4Q96KN9 370 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 TBC1D10AQ9BXI6 508 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 KIF9Q9HAQ2 790 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 C1orf112Q9NSG2 853 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 FBXO28Q9NVF7 368 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 A6NHS1 94 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 CLGNO14967 610 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 PPP1R12AO14974 1030 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 LIASO43766 372 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 TPBGLP0DKB5 382 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 GM2AP17900 193 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 CCNHP51946 323 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 ENPEPQ07075 957 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 DMP1Q13316 513 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 MAMLD1Q13495 774 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 SLC1A5Q15758 541 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 ZYXQ15942 572 aaKnown RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 SPDYAQ5MJ70 313 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 CC2D2BQ6DHV5 1058 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 C4orf33Q8N1A6 199 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 GLIS1Q8NBF1 620 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 PRMT6Q96LA8 375 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 AGBL1Q96MI9 1066 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 FHDC1Q9C0D6 1143 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 MRPL47Q9HD33 250 aaKnown RBP12.92□□□□□ -0.34
COL3A1-206ENST00000487010 KMT5AQ9NQR1 393 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 ANKEF1Q9NU02 776 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 TBC1D22BQ9NU19 505 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 FEM1BQ9UK73 627 aa12.92□□□□□ -0.34
COL3A1-206ENST00000487010 COL11A2P13942 1736 aaPredicted RBP12.91□□□□□ -0.34
COL3A1-206ENST00000487010 TRAFD1O14545 582 aaPredicted RBP12.91□□□□□ -0.34
COL3A1-206ENST00000487010 TYROBPO43914 113 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 PECAM1P16284 738 aaPredicted RBP12.91□□□□□ -0.34
COL3A1-206ENST00000487010 CA4P22748 312 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 DSG3P32926 999 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 GCKP35557 465 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 GJC1P36383 396 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 RASSF2P50749 326 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 RAD23BP54727 409 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 PSMC5P62195 406 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 IRX1P78414 480 aaPredicted RBP12.91□□□□□ -0.34
COL3A1-206ENST00000487010 MRPS9P82933 396 aaKnown RBP12.91□□□□□ -0.34
COL3A1-206ENST00000487010 RNASELQ05823 741 aaKnown RBP12.91□□□□□ -0.34
COL3A1-206ENST00000487010 NFX1Q12986 1120 aaKnown RBP12.91□□□□□ -0.34
COL3A1-206ENST00000487010 MTMR1Q13613 665 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 FASTKD3Q14CZ7 662 aaKnown RBP12.91□□□□□ -0.34
COL3A1-206ENST00000487010 WASHC2DQ5SRD0 308 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 C15orf39Q6ZRI6 1047 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 PAXIP1Q6ZW49 1069 aaPredicted RBP12.91□□□□□ -0.34
COL3A1-206ENST00000487010 GPD1LQ8N335 351 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 ENDOVQ8N8Q3 282 aaKnown RBP12.91□□□□□ -0.34
COL3A1-206ENST00000487010 ZNF516Q92618 1163 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 MASTLQ96GX5 879 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 C11orf70Q9BRQ4 267 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 FAM167BQ9BTA0 163 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 CYLDQ9NQC7 956 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 DNPEPQ9ULA0 475 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 CCPG1Q9ULG6 757 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 USTQ9Y2C2 406 aa12.91□□□□□ -0.34
COL3A1-206ENST00000487010 ALOX15BO15296 676 aa12.9□□□□□ -0.34
COL3A1-206ENST00000487010 ZSCAN5DPP0CG00 497 aa12.9□□□□□ -0.34
COL3A1-206ENST00000487010 CETN2P41208 172 aa12.9□□□□□ -0.34
COL3A1-206ENST00000487010 SSR1P43307 286 aaKnown RBP12.9□□□□□ -0.34
COL3A1-206ENST00000487010 RASA2Q15283 850 aa12.9□□□□□ -0.34
COL3A1-206ENST00000487010 EAPPQ56P03 285 aaPredicted RBP12.9□□□□□ -0.34
COL3A1-206ENST00000487010 HP1BP3Q5SSJ5 553 aaPredicted RBP12.9□□□□□ -0.34
COL3A1-206ENST00000487010 HHATQ5VTY9 493 aa12.9□□□□□ -0.34
COL3A1-206ENST00000487010 PLEKHA7Q6IQ23 1121 aa12.9□□□□□ -0.34
COL3A1-206ENST00000487010 ZNF449Q6P9G9 518 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms