RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 RFC5P40937 340 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 RPS6KA3P51812 740 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 SESN3P58005 492 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 MTHFD1LQ6UB35 978 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 CLNKQ7Z7G1 428 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 PRUNE1Q86TP1 453 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 C12orf56Q8IXR9 622 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 SLC5A5Q92911 643 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 MKL1Q969V6 931 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 SAYSD1Q9NPB0 183 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 ACP6Q9NPH0 428 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 CYLDQ9NQC7 956 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 R3HDM2Q9Y2K5 976 aaKnown RBP14.07□□□□□ -0.16
USP40-214ENST00000483519 ARHGEF35A5YM69 484 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 POC1B-GALNT4F8VUJ3 575 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 PPEF1O14829 653 aaPredicted RBP14.07□□□□□ -0.16
USP40-214ENST00000483519 PSMD10O75832 226 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 EEF2P13639 858 aaKnown RBP14.07□□□□□ -0.16
USP40-214ENST00000483519 RCN2Q14257 317 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 SNX30Q5VWJ9 437 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 GSTA5Q7RTV2 222 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 OTOAQ7RTW8 1153 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 XXYLT1Q8NBI6 393 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 TRIM4Q9C037 500 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 GRID1Q9ULK0 1009 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 PIK3CDO00329 1044 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 GCAP28676 217 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 HOXA13P31271 388 aaPredicted RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 PTP4A2Q12974 167 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 KLF1Q13351 362 aaPredicted RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 RCN1Q15293 331 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 PKN2Q16513 984 aaKnown RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 KHDC1Q4VXA5 237 aaKnown RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 C1orf220Q5T0J3 134 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 OR52E8Q6IFG1 317 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 ANKS1BQ7Z6G8 1248 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 SP8Q8IXZ3 490 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 C4orf33Q8N1A6 199 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 PPFIBP2Q8ND30 876 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 ACCSQ96QU6 501 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 HERPUD2Q9BSE4 406 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 TMEM117Q9H0C3 514 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 NPHS2Q9NP85 383 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 NYAP2Q9P242 653 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 ANKFY1Q9P2R3 1169 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 SIGLEC16A6NMB1 481 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 GRIN3BO60391 1043 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 GAS7O60861 476 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 RALAP11233 206 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 IKQ13123 557 aaPredicted RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 GPR162Q16538 588 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 CLEC16AQ2KHT3 1053 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 P3H1Q32P28 736 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 MTDHQ86UE4 582 aaKnown RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 ZNF75CPQ92670 426 aaPredicted RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 TRIM11Q96F44 468 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 DDX27Q96GQ7 796 aaKnown RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 BTBD10Q9BSF8 475 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 AVENQ9NQS1 362 aaPredicted RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 LARSQ9P2J5 1176 aaKnown RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 BRCA1P38398 1863 aaKnown RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 LOXHD1Q8IVV2 1947 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 SNAP25P60880 206 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 SLC1A5Q15758 541 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 CTC1Q2NKJ3 1217 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 PCNX4Q63HM2 1172 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 IFNLR1Q8IU57 520 aaPredicted RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 STMN2Q93045 179 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 MIPEPQ99797 713 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 CADM1Q9BY67 442 aaKnown RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 SSU72Q9NP77 194 aaKnown RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 HSPBP1Q9NZL4 362 aa14.06□□□□□ -0.16
USP40-214ENST00000483519 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.06□□□□□ -0.16
USP40-214ENST00000483519 F5H6K3 240 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 TYROBPO43914 113 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 HAUS5O94927 633 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 MYBL1P10243 752 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 MAPTP10636 758 aaKnown RBP14.05□□□□□ -0.16
USP40-214ENST00000483519 PLS3P13797 630 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 KLRC2P26717 231 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 FKBP1AP62942 108 aaKnown RBP14.05□□□□□ -0.16
USP40-214ENST00000483519 SLC34A1Q06495 639 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 RASA2Q15283 850 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 SEPT7Q16181 437 aaKnown RBP14.05□□□□□ -0.16
USP40-214ENST00000483519 PPP1R15BQ5SWA1 713 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 RNF220Q5VTB9 566 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 RFWD3Q6PCD5 774 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 LVRNQ6Q4G3 990 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 LRRC74BQ6ZQY2 392 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 UCMAQ8WVF2 138 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 SCG3Q8WXD2 468 aaKnown RBP14.05□□□□□ -0.16
USP40-214ENST00000483519 IFT43Q96FT9 208 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 FGD4Q96M96 766 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 CBWD1Q9BRT8 395 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 WDR18Q9BV38 432 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 HEMGNQ9BXL5 484 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 WDR11Q9BZH6 1224 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 PIDD1Q9HB75 910 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 PSMC3IPQ9P2W1 217 aaPredicted RBP14.05□□□□□ -0.16
USP40-214ENST00000483519 SLC24A2Q9UI40 661 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms