RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 GLRA4Q5JXX5 417 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 C10orf76Q5T2E6 689 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 DCLRE1AQ6PJP8 1040 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 DEFB128Q7Z7B8 93 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 UNC93AQ86WB7 457 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 ARHGEF19Q8IW93 802 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 TMEM86AQ8N2M4 240 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 TOP6BLQ8N6T0 577 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 RNF169Q8NCN4 708 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 LPPQ93052 612 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 TATDN2Q93075 761 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 TOP1MTQ969P6 601 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 CCDC42Q96M95 316 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 ZFP42Q96MM3 310 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 FAM193BQ96PV7 902 aaPredicted RBP10.89□□□□□ -0.67
USP39-215ENST00000481409 GPR88Q9GZN0 384 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 APOBEC3GQ9HC16 384 aaKnown RBP10.89□□□□□ -0.67
USP39-215ENST00000481409 LUC7LQ9NQ29 371 aaKnown RBP10.89□□□□□ -0.67
USP39-215ENST00000481409 STK39Q9UEW8 545 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 TUBGCP4Q9UGJ1 667 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 DSEQ9UL01 958 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 KIAA1257Q9ULG3 409 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 NUB1Q9Y5A7 615 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 ALPK3Q96L96 1907 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 RNF225M0QZC1 329 aaPredicted RBP10.88□□□□□ -0.67
USP39-215ENST00000481409 FOXN3O00409 490 aaPredicted RBP10.88□□□□□ -0.67
USP39-215ENST00000481409 PODXLO00592 558 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 TRAPPC3O43617 180 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 FGBP02675 491 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 PAEPP09466 180 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 ASPAP45381 313 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 AARSP49588 968 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP39-215ENST00000481409 LILRA4P59901 499 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 KRT83P78385 493 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 CCZ1BP86790 482 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 CCZ1P86791 482 aaPredicted RBP10.88□□□□□ -0.67
USP39-215ENST00000481409 PTK2Q05397 1052 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 RNASELQ05823 741 aaKnown RBP10.88□□□□□ -0.67
USP39-215ENST00000481409 INCA1Q0VD86 236 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 LRMPQ12912 555 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 BMS1Q14692 1282 aaKnown RBP10.88□□□□□ -0.67
USP39-215ENST00000481409 PTPN21Q16825 1174 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 UPP1Q16831 310 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 CLLU1OSQ5K130 101 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 LIMS2Q7Z4I7 341 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 IRF2BP2Q7Z5L9 587 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 TMEM139Q8IV31 216 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 LRRC43Q8N309 656 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 UBR7Q8N806 425 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 PHOSPHO2Q8TCD6 241 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 C18orf25Q96B23 403 aaPredicted RBP10.88□□□□□ -0.67
USP39-215ENST00000481409 KREMEN1Q96MU8 473 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 CASD1Q96PB1 797 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 PI4K2AQ9BTU6 479 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 KCND1Q9NSA2 647 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 MIOSQ9NXC5 875 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 ZKSCAN5Q9Y2L8 839 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 NR2E3Q9Y5X4 410 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 TET1Q8NFU7 2136 aa10.88□□□□□ -0.67
USP39-215ENST00000481409 C19orf67A6NJJ6 358 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 MEIS3P2A8K0S8 358 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 HUS1O60921 280 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 DGKIO75912 1065 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 CLSTN1O94985 981 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 KIF4AO95239 1232 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 ACO1P21399 889 aaKnown RBP10.87□□□□□ -0.67
USP39-215ENST00000481409 ITGB8P26012 769 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 LHX1P48742 406 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 PDE6CP51160 858 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 SOX4Q06945 474 aaPredicted RBP10.87□□□□□ -0.67
USP39-215ENST00000481409 ELAVL2Q12926 359 aaKnown RBP10.87□□□□□ -0.67
USP39-215ENST00000481409 STILQ15468 1287 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 ARHGAP44Q17R89 818 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 HGSNATQ68CP4 663 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 GJB7Q6PEY0 223 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 WDR59Q6PJI9 974 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 TRIM72Q6ZMU5 477 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 COLGALT2Q8IYK4 626 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 CMTR2Q8IYT2 770 aaKnown RBP10.87□□□□□ -0.67
USP39-215ENST00000481409 APPL2Q8NEU8 664 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 SPDYE1Q8NFV5 336 aaPredicted RBP10.87□□□□□ -0.67
USP39-215ENST00000481409 VWCEQ96DN2 955 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 SLC9A7Q96T83 725 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 LBHD1Q9BQE6 289 aaPredicted RBP10.87□□□□□ -0.67
USP39-215ENST00000481409 COLEC11Q9BWP8 271 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 OXCT2Q9BYC2 517 aaPredicted RBP10.87□□□□□ -0.67
USP39-215ENST00000481409 DEF6Q9H4E7 631 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 NHEJ1Q9H9Q4 299 aaPredicted RBP10.87□□□□□ -0.67
USP39-215ENST00000481409 CISHQ9NSE2 258 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 RNF19AQ9NV58 838 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 TBC1D13Q9NVG8 400 aa10.87□□□□□ -0.67
USP39-215ENST00000481409 BARX2Q9UMQ3 279 aaPredicted RBP10.87□□□□□ -0.67
USP39-215ENST00000481409 DNAH12Q6ZR08 3092 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 GOLGA6L9A6NEM1 432 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 EIF3CLB5ME19 914 aaKnown RBP10.86□□□□□ -0.67
USP39-215ENST00000481409 RBAK-RBAKDNI3L0D1 243 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 M0QZQ0 153 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 ZSCAN12O43309 604 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 MED7O43513 233 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 CILPO75339 1184 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms