RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 ITGB3P05106 788 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 URODP06132 367 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 ODC1P11926 461 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 TRIM21P19474 475 aaKnown RBP8.88□□□□□ -0.99
USP54-212ENST00000480210 FGFR3P22607 806 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 POLR2BP30876 1174 aaKnown RBP8.88□□□□□ -0.99
USP54-212ENST00000480210 MXI1P50539 228 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 DSG1Q02413 1049 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 KCNH2Q12809 1159 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 SMC1AQ14683 1233 aaKnown RBP8.88□□□□□ -0.99
USP54-212ENST00000480210 TIGD5Q53EQ6 642 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 TCP11X2Q5H9J9 407 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 DCAF17Q5H9S7 520 aaPredicted RBP8.88□□□□□ -0.99
USP54-212ENST00000480210 WDR44Q5JSH3 913 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 KIAA1841Q6NSI8 718 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 C11orf57Q6ZUT1 292 aaPredicted RBP8.88□□□□□ -0.99
USP54-212ENST00000480210 ANKS3Q6ZW76 656 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 TMC7Q7Z402 723 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 PPFIBP1Q86W92 1011 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 VPS52Q8N1B4 723 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 TOP6BLQ8N6T0 577 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 FBXL13Q8NEE6 735 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 OR5B17Q8NGF7 314 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 FAM200AQ8TCP9 573 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 ZNF516Q92618 1163 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 SLC35C1Q96A29 364 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 MRPL38Q96DV4 380 aaKnown RBP8.88□□□□□ -0.99
USP54-212ENST00000480210 HPDLQ96IR7 371 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 CNOT6LQ96LI5 555 aaKnown RBP8.88□□□□□ -0.99
USP54-212ENST00000480210 MED15Q96RN5 788 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 POP1Q99575 1024 aaKnown RBP8.88□□□□□ -0.99
USP54-212ENST00000480210 TTPALQ9BTX7 342 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 EMILIN2Q9BXX0 1053 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 MTMR12Q9C0I1 747 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 CXCL16Q9H2A7 254 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 TSPY26PQ9H489 355 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 MRPL17Q9NRX2 175 aaKnown RBP8.88□□□□□ -0.99
USP54-212ENST00000480210 CHST7Q9NS84 486 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 MARCH5Q9NX47 278 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 FNIP2Q9P278 1114 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 TUBGCP4Q9UGJ1 667 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 DPP7Q9UHL4 492 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 MAFFQ9ULX9 164 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 DAAM1Q9Y4D1 1078 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 MYH10P35580 1976 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 MYO7AQ13402 2215 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 KCNJ18B7U540 433 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 GOLGA6L19H0YKK7 550 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 TULP1O00294 542 aaPredicted RBP8.87□□□□□ -0.99
USP54-212ENST00000480210 SOX1O00570 391 aaPredicted RBP8.87□□□□□ -0.99
USP54-212ENST00000480210 FSCN2O14926 492 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 HUS1O60921 280 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 ARHGEF15O94989 841 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 KIF4AO95239 1232 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 CXCL14O95715 111 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 CST3P01034 146 aaPredicted RBP8.87□□□□□ -0.99
USP54-212ENST00000480210 CYP11A1P05108 521 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 LHX1P48742 406 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 FMO5P49326 533 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 GLUD2P49448 558 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 FXR1P51114 621 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP54-212ENST00000480210 WNT7BP56706 349 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 DLG4P78352 724 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 PPP3CAQ08209 521 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 SMARCB1Q12824 385 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 NCOA4Q13772 614 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 MRPL58Q14197 206 aaKnown RBP8.87□□□□□ -0.99
USP54-212ENST00000480210 KCNJ12Q14500 433 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 FILIP1LQ4L180 1135 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 ZNF667Q5HYK9 610 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 C1orf220Q5T0J3 134 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 FAM171A1Q5VUB5 890 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 CDKAL1Q5VV42 579 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 KIAA0319Q5VV43 1072 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 ELMSAN1Q6PJG2 1045 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 CD300LGQ6UXG3 332 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 RTL10Q7L3V2 364 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 IRF2BP1Q8IU81 584 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 THEM5Q8N1Q8 247 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 PDCL2Q8N4E4 241 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 CXorf38Q8TB03 319 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 PLEKHO2Q8TD55 490 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 MICAL1Q8TDZ2 1067 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 PIK3R5Q8WYR1 880 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 LRCH3Q96II8 777 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 SENP8Q96LD8 212 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 PAAF1Q9BRP4 392 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 TUBGCP2Q9BSJ2 902 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 GPR62Q9BZJ7 368 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 GZF1Q9H116 711 aaPredicted RBP8.87□□□□□ -0.99
USP54-212ENST00000480210 ZBP1Q9H171 429 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 TTYH1Q9H313 450 aaPredicted RBP8.87□□□□□ -0.99
USP54-212ENST00000480210 CYP3A43Q9HB55 503 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 GOLGA2P5Q9HBQ8 144 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 RXFP1Q9HBX9 757 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 ALG13Q9NP73 1137 aaKnown RBP8.87□□□□□ -0.99
USP54-212ENST00000480210 FANCLQ9NW38 375 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 RAB20Q9NX57 234 aa8.87□□□□□ -0.99
USP54-212ENST00000480210 LIMA1Q9UHB6 759 aaKnown RBP8.87□□□□□ -0.99
USP54-212ENST00000480210 SIX4Q9UIU6 781 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms