RNA–Protein interactions for RNA: ENST00000470652.1

COL9A1-206, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 531 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-206ENST00000470652 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.34□□□□□ -1.55
COL9A1-206ENST00000470652 PCDHA13Q9Y5I0 950 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 FER1L4A9Z1Z3 1794 aa5.34□□□□□ -1.56
COL9A1-206ENST00000470652 BCORL1Q5H9F3 1711 aa5.34□□□□□ -1.56
COL9A1-206ENST00000470652 E9PCH4 1651 aa5.34□□□□□ -1.56
COL9A1-206ENST00000470652 RNF17Q9BXT8 1623 aaKnown RBP5.34□□□□□ -1.56
COL9A1-206ENST00000470652 RTEL1-TNFRSF6BF6WH68 1400 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 ROCK1Q13464 1354 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 WDR33Q9C0J8 1336 aaKnown RBP5.33□□□□□ -1.56
COL9A1-206ENST00000470652 CCDC154A6NI56 674 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 NCR1O76036 304 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 ABHD16AO95870 558 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 EDNRBP24530 442 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 BMPR1AP36894 532 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 MXRA7P84157 204 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 PTPAQ15257 358 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 UAP1L1Q3KQV9 507 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 PDCD4Q53EL6 469 aaKnown RBP5.33□□□□□ -1.56
COL9A1-206ENST00000470652 ARMC6Q6NXE6 501 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 GGT6Q6P531 493 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 KCNV1Q6PIU1 500 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 ZBTB46Q86UZ6 589 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 TMX3Q96JJ7 454 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 MYOCQ99972 504 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 RUVBL1Q9Y265 456 aaKnown RBP5.33□□□□□ -1.56
COL9A1-206ENST00000470652 FPGT-TNNI3KV9GXZ4 949 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 UGGT1Q9NYU2 1555 aa5.33□□□□□ -1.56
COL9A1-206ENST00000470652 DHX29Q7Z478 1369 aaKnown RBP5.32□□□□□ -1.56
COL9A1-206ENST00000470652 ARID4BQ4LE39 1312 aaPredicted RBP5.32□□□□□ -1.56
COL9A1-206ENST00000470652 TMEM200CA6NKL6 621 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 INHBEP58166 350 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 TARDBPQ13148 414 aaKnown RBP eCLIP5.32□□□□□ -1.56
COL9A1-206ENST00000470652 IL10RAQ13651 578 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 RAB39AQ14964 217 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 BEAN1Q3B7T3 259 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 C3orf36Q3SXR2 165 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 TSHZ3Q63HK5 1081 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 UBE3BQ7Z3V4 1068 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 TTC7BQ86TV6 843 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 OR56A1Q8NGH5 318 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 PROKR1Q8TCW9 393 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 LARP4BQ92615 738 aaKnown RBP5.32□□□□□ -1.56
COL9A1-206ENST00000470652 CEP89Q96ST8 783 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 NEU1Q99519 415 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 PRRX2Q99811 253 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 C11orf54Q9H0W9 315 aaPredicted RBP5.32□□□□□ -1.56
COL9A1-206ENST00000470652 FBXO34Q9NWN3 711 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 CALCOCO1Q9P1Z2 691 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 SERPINB13Q9UIV8 391 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 HS3ST4Q9Y661 456 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 CFAP20Q9Y6A4 193 aaKnown RBP5.32□□□□□ -1.56
COL9A1-206ENST00000470652 CAMSAP1Q5T5Y3 1602 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 IQGAP3Q86VI3 1631 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 EIF2AK4Q9P2K8 1649 aaKnown RBP5.32□□□□□ -1.56
COL9A1-206ENST00000470652 ABCC3O15438 1527 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 MYO5BQ9ULV0 1848 aa5.32□□□□□ -1.56
COL9A1-206ENST00000470652 C3P01024 1663 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 ADAMTSL3P82987 1691 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 VWDEQ8N2E2 1590 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 REREQ9P2R6 1566 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 TCRBV7S2A1N4TA0A589 114 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 TMEM191CA6NGB0 347 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 KIAA0391O15091 583 aaKnown RBP5.31□□□□□ -1.56
COL9A1-206ENST00000470652 NDUFA10O95299 355 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 MTHFD1P11586 935 aaKnown RBP5.31□□□□□ -1.56
COL9A1-206ENST00000470652 GCSHP23434 173 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 ZFP36P26651 326 aaKnown RBP5.31□□□□□ -1.56
COL9A1-206ENST00000470652 NEK2P51955 445 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 DPTQ07507 201 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 TMEM240Q5SV17 173 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 CMTR2Q8IYT2 770 aaKnown RBP5.31□□□□□ -1.56
COL9A1-206ENST00000470652 CPA6Q8N4T0 437 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 FITM2Q8N6M3 262 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 IFI44Q8TCB0 444 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 CLPTM1LQ96KA5 538 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 MRGPRX4Q96LA9 322 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 MLST8Q9BVC4 326 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 TEX101Q9BY14 249 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 IKZF4Q9H2S9 585 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 RNPEPQ9H4A4 650 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 GSTO2Q9H4Y5 243 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 TCF7L1Q9HCS4 588 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 MAN1C1Q9NR34 630 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 KLHL11Q9NVR0 708 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 DDX56Q9NY93 547 aaKnown RBP5.31□□□□□ -1.56
COL9A1-206ENST00000470652 LUC7L2Q9Y383 392 aaKnown RBP5.31□□□□□ -1.56
COL9A1-206ENST00000470652 PCDHB1Q9Y5F3 818 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 PRDM15P57071 1507 aaPredicted RBP5.31□□□□□ -1.56
COL9A1-206ENST00000470652 FAM135AQ9P2D6 1515 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 MAGI2Q86UL8 1455 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 ERBINQ96RT1 1412 aa5.31□□□□□ -1.56
COL9A1-206ENST00000470652 NUP155O75694 1391 aa5.3□□□□□ -1.56
COL9A1-206ENST00000470652 DHX57Q6P158 1386 aaKnown RBP5.3□□□□□ -1.56
COL9A1-206ENST00000470652 ZRANB2O95218 330 aaKnown RBP eCLIP5.3□□□□□ -1.56
COL9A1-206ENST00000470652 CFIP05156 583 aa5.3□□□□□ -1.56
COL9A1-206ENST00000470652 PDGFRBP09619 1106 aa5.3□□□□□ -1.56
COL9A1-206ENST00000470652 CKBP12277 381 aa5.3□□□□□ -1.56
COL9A1-206ENST00000470652 VCAM1P19320 739 aa5.3□□□□□ -1.56
COL9A1-206ENST00000470652 INHBCP55103 352 aa5.3□□□□□ -1.56
COL9A1-206ENST00000470652 SPDYE7PQ495Y7 208 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms