RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 IKZF4Q9H2S9 585 aa5.2□□□□□ -1.58
SF3B1-208ENST00000470268 PARVGQ9HBI0 331 aa5.2□□□□□ -1.58
SF3B1-208ENST00000470268 SLC39A2Q9NP94 309 aa5.2□□□□□ -1.58
SF3B1-208ENST00000470268 STARD7Q9NQZ5 370 aa5.2□□□□□ -1.58
SF3B1-208ENST00000470268 CACNA2D2Q9NY47 1150 aa5.2□□□□□ -1.58
SF3B1-208ENST00000470268 HOOK1Q9UJC3 728 aaKnown RBP5.2□□□□□ -1.58
SF3B1-208ENST00000470268 MAPK8IP1Q9UQF2 711 aa5.2□□□□□ -1.58
SF3B1-208ENST00000470268 SCN10AQ9Y5Y9 1956 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 C17orf102A2RUQ5 167 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 RRN3P2A6NIE6 340 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 KBTBD13C9JR72 458 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 AP5Z1O43299 807 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 CSDE1O75534 798 aaKnown RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 CABYRO75952 493 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 SMC2O95347 1197 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TFRCP02786 760 aaKnown RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 VTNP04004 478 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 EDN1P05305 212 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 MYBP10242 640 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 PLS3P13797 630 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 EN2P19622 333 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 HOXD13P35453 343 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 PRCPP42785 496 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 CDK7P50613 346 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 RTP1P59025 263 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 ARID5AQ03989 594 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TMEM62Q0P6H9 643 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 CAPSQ13938 189 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 SETDB1Q15047 1291 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 ZC2HC1CQ53FD0 456 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 FAM26FQ5R3K3 315 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 ODR4Q5SWX8 454 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 ZNF658Q5TYW1 1059 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 RASIP1Q5U651 963 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 LLGL2Q6P1M3 1020 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 C11orf57Q6ZUT1 292 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 ZNF720Q7Z2F6 126 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 CCDC65Q8IXS2 484 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 MYCT1Q8N699 235 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 STK35Q8TDR2 534 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 SCFD1Q8WVM8 642 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 DNAJB3Q8WWF6 145 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 DHX38Q92620 1227 aaKnown RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 CCDC34Q96HJ3 373 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 PPP1R16BQ96T49 567 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 NTPCRQ9BSD7 190 aaKnown RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 STRA6Q9BX79 667 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 KRTAP9-9Q9BYP9 154 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 KRTAP9-4Q9BYQ2 154 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 LRRC27Q9C0I9 530 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 SENP6Q9GZR1 1112 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 FAM49AQ9H0Q0 323 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TRPV6Q9H1D0 765 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 MIR1-1HGQ9H1L0 117 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 MINDY3Q9H8M7 445 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 IFT122Q9HBG6 1241 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 OLFML3Q9NRN5 406 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TRMT13Q9NUP7 481 aaKnown RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 PCMTD2Q9NV79 361 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 COL4A3BPQ9Y5P4 624 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 FRMPD3Q5JV73 1810 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 ARVCFO00192 962 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 SLC16A4O15374 487 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 MAGEB2O15479 319 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 B4GALT4O60513 344 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TBCAO75347 108 aaKnown RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 GPR32O75388 356 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 LETM1O95202 739 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 IQCF3P0C7M6 154 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 CYP2C9P11712 490 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 ATF4P18848 351 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 CDC25BP30305 580 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 PMS1P54277 932 aaKnown RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 NLRP12P59046 1061 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 GSTM4Q03013 218 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 LAMTOR4Q0VGL1 99 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 COL9A2Q14055 689 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 HGSNATQ68CP4 663 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TXNDC11Q6PKC3 985 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 EPM2AIP1Q7L775 607 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 UBE2Q1Q7Z7E8 422 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 SERINC5Q86VE9 423 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 RHPN2Q8IUC4 686 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 FAM178BQ8IXR5 827 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 FAM126BQ8IXS8 530 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TRIML1Q8N9V2 468 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 GOLM1Q8NBJ4 401 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 RNF149Q8NC42 400 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TMEM161BQ8NDZ6 487 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TMEM40Q8WWA1 233 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 PSPC1Q8WXF1 523 aaKnown RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 KIFAP3Q92845 792 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 PAWRQ96IZ0 340 aaKnown RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 EAF1Q96JC9 268 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 SEC16BQ96JE7 1060 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TIPINQ9BVW5 301 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 TSPY26PQ9H489 355 aa5.19□□□□□ -1.58
SF3B1-208ENST00000470268 MRPL44Q9H9J2 332 aaKnown RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 RRAGDQ9NQL2 400 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-208ENST00000470268 EXOC1Q9NV70 894 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms