RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CLASRPQ8N2M8 674 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 FBXO18Q8NFZ0 1043 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 NELL1Q92832 810 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 MFSD3Q96ES6 412 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 USP25Q9UHP3 1055 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 IPPQ9Y573 584 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 RRP9O43818 475 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 SNX2O60749 519 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 HLA-DOAP06340 250 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 TYRP1P17643 537 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 FBLP22087 321 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 SERPINB3P29508 390 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 PTPN7P35236 360 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 BMPR1AP36894 532 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 CLK3P49761 638 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 CHN2P52757 468 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 CCT2P78371 535 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 RESTQ13127 1097 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 DDX10Q13206 875 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 PICALMQ13492 652 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 PIN1Q13526 163 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 BMT2Q1RMZ1 405 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 GFOD2Q3B7J2 385 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 C19orf54Q5BKX5 351 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 MFSD14BQ5SR56 506 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 JAKMIP3Q5VZ66 844 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 MZT2AQ6P582 158 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 PDZD4Q76G19 769 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 REPS2Q8NFH8 660 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 SLC35B2Q8TB61 432 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 NTN5Q8WTR8 489 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 ZNF480Q8WV37 535 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 JPH3Q8WXH2 748 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 ASB10Q8WXI3 467 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 EAF2Q96CJ1 260 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 ZNF830Q96NB3 372 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 SCLT1Q96NL6 688 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 STRBPQ96SI9 672 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 NELL2Q99435 816 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 ADAM2Q99965 735 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 RTFDC1Q9BY42 306 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 RSAD1Q9HA92 442 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 SH3GLB2Q9NR46 395 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 SYBUQ9NX95 663 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 RNF181Q9P0P0 153 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 SMC3Q9UQE7 1217 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 EPN1Q9Y6I3 576 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 WASHC2AQ641Q2 1341 aa5.62□□□□□ -1.51
CCDC88A-210ENST00000468534 GTPBP10A4D1E9 387 aaKnown RBP5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 A6NCN8 305 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 PRPF3O43395 683 aaKnown RBP5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 HKR1P10072 659 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 ITGAMP11215 1152 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 TNFAIP3P21580 790 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 ZNF131P52739 623 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 ZNF132P52740 706 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 SEC24CP53992 1094 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 RAP2BP61225 183 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 CDK17Q00537 523 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 PDE1CQ14123 709 aaPredicted RBP5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 PDCD1Q15116 288 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 UGT8Q16880 541 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 FAM102AQ5T9C2 384 aaPredicted RBP5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 SPATA31A6Q5VVP1 1343 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 KIAA1614Q5VZ46 1190 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 TOGARAM2Q6ZUX3 1019 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 RD3Q7Z3Z2 195 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 TTC30AQ86WT1 665 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 OR8H2Q8N162 312 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 SLC44A3Q8N4M1 653 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 MAGEB6Q8N7X4 407 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 ZFP28Q8NHY6 868 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 CCDC34Q96HJ3 373 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 NEU1Q99519 415 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 XPO4Q9C0E2 1151 aaKnown RBP5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 R3HDMLQ9H3Y0 253 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 ADARB2Q9NS39 739 aaKnown RBP5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 TOPORSQ9NS56 1045 aaPredicted RBP5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 DKK2Q9UBU2 259 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 DPP7Q9UHL4 492 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 MAFFQ9ULX9 164 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 FPGT-TNNI3KV9GXZ4 949 aa5.61□□□□□ -1.51
CCDC88A-210ENST00000468534 FAM170AA1A519 330 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 PIPSLA2A3N6 862 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 NBNO60934 754 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 KATNA1O75449 491 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 SPDEFO95238 335 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 NBPF7P0C2Y1 421 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 OAS2P29728 719 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 ADSLP30566 484 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 ANP32AP39687 249 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 PTH2RP49190 550 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 GUCY2FP51841 1108 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 C21orf58P58505 322 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 MAP2K1Q02750 393 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 FOXI1Q12951 378 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 ATXN7L2Q5T6C5 722 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 MZT2BQ6NZ67 158 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 CCDC73Q6ZRK6 1079 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 MAATS1Q7Z4T9 603 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms