RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SYCP2LQ5T4T6 812 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 C1orf186Q6ZWK4 172 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 ATL2Q8NHH9 583 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 DNAJC1Q96KC8 554 aaKnown RBP12.39□□□□□ -0.43
CPSF3-202ENST00000460593 TLE6Q9H808 572 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 H3BRJ5 948 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 C2CD2LO14523 706 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 TRAFD1O14545 582 aaPredicted RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 RNASEH1O60930 286 aaKnown RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 EEF2P13639 858 aaKnown RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 SSTR1P30872 391 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 TAS2R40P59535 323 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 IKQ13123 557 aaPredicted RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 CMPK2Q5EBM0 449 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 C1orf220Q5T0J3 134 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 FYB2Q5VWT5 728 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 TCP10LQ8TDR4 215 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 TRAPPC9Q96Q05 1148 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 PI4K2AQ9BTU6 479 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 TIPINQ9BVW5 301 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 TMEM120AQ9BXJ8 343 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 MROH7Q68CQ1 1323 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 IRS2Q9Y4H2 1338 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 SLITRK3O94933 977 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 LDHCP07864 332 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 FDX1P10109 184 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 ESRRAP11474 423 aaPredicted RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 TCF4P15884 667 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 PGM1P36871 562 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 VAMP7P51809 220 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 SEPT7Q16181 437 aaKnown RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 MFSD14BQ5SR56 506 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 NSL1Q96IY1 281 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 ZNF395Q9H8N7 513 aaPredicted RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 OLFML3Q9NRN5 406 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 RHBDL2Q9NX52 303 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 NAV1Q8NEY1 1877 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 FAM237BA0A1B0GVD1 139 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 TYROBPO43914 113 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 IFNB1P01574 187 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 LMNAP02545 664 aaKnown RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 CYP1A2P05177 515 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 ENO1P06733 434 aaKnown RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 CYP3A4P08684 503 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 KRT5P13647 590 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 CYP11B1P15538 503 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 PDIA2Q13087 525 aaKnown RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 PASD1Q8IV76 773 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 NMD3Q96D46 503 aaKnown RBP12.38□□□□□ -0.43
CPSF3-202ENST00000460593 SYNCQ9H7C4 482 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 DMAC2Q9NW81 257 aa12.38□□□□□ -0.43
CPSF3-202ENST00000460593 E5RJQ4 531 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 K7ENM7 598 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 ARFIP2P53365 341 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 DEUP1Q05D60 604 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 KDSRQ06136 332 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 GPS1Q13098 491 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 SPATA16Q9BXB7 569 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 NMUR2Q9GZQ4 415 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 EBF3Q9H4W6 596 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 ANKFY1Q9P2R3 1169 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 DNPEPQ9ULA0 475 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 PPM1HQ9ULR3 514 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 RPS6KL1Q9Y6S9 549 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 CFHP08603 1231 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 TROVE2P10155 538 aaKnown RBP eCLIP12.37□□□□□ -0.43
CPSF3-202ENST00000460593 TFDP1Q14186 410 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 PPP1R18Q6NYC8 613 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 CFAP61Q8NHU2 1237 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 JDP2Q8WYK2 163 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 TTC17Q96AE7 1141 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 DDX27Q96GQ7 796 aaKnown RBP12.37□□□□□ -0.43
CPSF3-202ENST00000460593 STX18Q9P2W9 335 aaKnown RBP12.37□□□□□ -0.43
CPSF3-202ENST00000460593 MARCOQ9UEW3 520 aaPredicted RBP12.37□□□□□ -0.43
CPSF3-202ENST00000460593 GTF3C4Q9UKN8 822 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 ACTL7BQ9Y614 415 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 DOT1LQ8TEK3 1739 aa12.37□□□□□ -0.43
CPSF3-202ENST00000460593 TMEM150BA6NC51 233 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 MEI4A8MW99 385 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 B2RBV5 119 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 PRPF4O43172 522 aaKnown RBP eCLIP12.36□□□□□ -0.43
CPSF3-202ENST00000460593 KITP10721 976 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 BGNP21810 368 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 TM4SF1P30408 202 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 GRIA2P42262 883 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 RAPH1Q70E73 1250 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 LINC00116Q8NCU8 138 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 SLCO2A1Q92959 643 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 CFAP57Q96MR6 1250 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 KCNK13Q9HB14 408 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 ZNF148Q9UQR1 794 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 TAF1LQ8IZX4 1826 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 HNRNPRO43390 633 aaKnown RBP12.36□□□□□ -0.43
CPSF3-202ENST00000460593 OPHN1O60890 802 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 SORBS2O94875 1100 aaKnown RBP12.36□□□□□ -0.43
CPSF3-202ENST00000460593 GSTA2P09210 222 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 ATF7P17544 494 aaPredicted RBP12.36□□□□□ -0.43
CPSF3-202ENST00000460593 ADRA2BP18089 450 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 ADSSP30520 456 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 ARSEP51690 589 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms