RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CETN3O15182 167 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 CYTH3O43739 400 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 DDHD2O94830 711 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 IVLP07476 585 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 P4HA1P13674 534 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 TMEM11P17152 192 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 FGFR3P22607 806 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 CCND1P24385 295 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 FNTAP49354 379 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 IL2P60568 153 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 CCNA1P78396 465 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 CBX3Q13185 183 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 SGCGQ13326 291 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 PICALMQ13492 652 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 SCARF1Q14162 830 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 GNA13Q14344 377 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 KCNB1Q14721 858 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 PPA1Q15181 289 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 POU4F3Q15319 338 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 ZNF792Q3KQV3 632 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 TWF2Q6IBS0 349 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 LIN54Q6MZP7 749 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 PPP1R21Q6ZMI0 780 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 LPCAT2Q7L5N7 544 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 TBC1D1Q86TI0 1168 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 FCHSD1Q86WN1 690 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 C16orf71Q8IYS4 520 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 UTP15Q8TED0 518 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 XAGE3Q8WTP9 111 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 NUDT8Q8WV74 236 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 ZFAND2BQ8WV99 257 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 GTF3C6Q969F1 213 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 TTC25Q96NG3 672 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 CATSPER2Q96P56 530 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 GORASP1Q9BQQ3 440 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 PLCB1Q9NQ66 1216 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 MTRF1LQ9UGC7 380 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 IBTKQ9P2D0 1353 aaPredicted RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 MAP2P11137 1827 aaKnown RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 A0A087WUV0 522 aaPredicted RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 LINC01387J3KSC0 135 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 EXTL3O43909 919 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 KCNH1O95259 989 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 LARGE1O95461 756 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 BAG2O95816 211 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 SERPINC1P01008 464 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 KRT1P04264 644 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 GBP1P32455 592 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 CETN2P41208 172 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 DGKGP49619 791 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 GTF2A2P52657 109 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 EVCP57679 992 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 PTSQ03393 145 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 UBXN1Q04323 297 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 AP1B1Q10567 949 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 KIF5AQ12840 1032 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 MSLNQ13421 630 aaPredicted RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 ITGA7Q13683 1181 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 NFE2L1Q14494 772 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 PCSK7Q16549 785 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 SUPT20HL1Q3ZLR7 823 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 IGSF11Q5DX21 431 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 INTS11Q5TA45 600 aaKnown RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 IKBIPQ70UQ0 350 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 SLC9B2Q86UD5 537 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 LUZP1Q86V48 1076 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 MCATQ8IVS2 390 aaKnown RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 CCDC13Q8IYE1 715 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 NEK11Q8NG66 645 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 DDX54Q8TDD1 881 aaKnown RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 OTUD7AQ8TE49 926 aaPredicted RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 HERVK_113Q902F9 699 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 SHC3Q92529 594 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 SPDL1Q96EA4 605 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 MAGEB10Q96LZ2 347 aaPredicted RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 NR1H4Q96RI1 486 aaPredicted RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 NCOR1P1Q9H4R4 102 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 BRD9Q9H8M2 597 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 ATP13A1Q9HD20 1204 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 UBN1Q9NPG3 1134 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 BATF3Q9NR55 127 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 SAMD15Q9P1V8 674 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 MTRRQ9UBK8 725 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 SAP30BPQ9UHR5 308 aaKnown RBP5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 SLC6A14Q9UN76 642 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 LIMCH1Q9UPQ0 1083 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 AKT3Q9Y243 479 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 SNX8Q9Y5X2 465 aa5.15□□□□□ -1.58
CCDC88A-209ENST00000456975 C4BP0C0L5 1744 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 GOLGA6L7A0A1B0GV03 622 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 hCG_1642624A0A1W2PR95 340 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 SLC12A8A0AV02 714 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 FAM177BA6PVY3 158 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 H0Y626 953 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 SHOXO15266 292 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 SLC7A4O43246 635 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 STRNO43815 780 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 POP4O95707 220 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 DLGAP3O95886 979 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 TYRP1P17643 537 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms