RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 WDR6Q9NNW5 1121 aaKnown RBP13.8□□□□□ -0.2
PRPF40A-203ENST00000448428 LIMD1Q9UGP4 676 aa13.8□□□□□ -0.2
PRPF40A-203ENST00000448428 USTQ9Y2C2 406 aa13.8□□□□□ -0.2
PRPF40A-203ENST00000448428 WDR27A2RRH5 827 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 KIAA0391O15091 583 aaKnown RBP13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 OAZ2O95190 189 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 HNRNPA1P09651 372 aaKnown RBP eCLIP13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 TMEM31Q5JXX7 168 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 LIN9Q5TKA1 542 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 NT5DC4Q86YG4 428 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 NELFCDQ8IXH7 590 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 ZDHHC14Q8IZN3 488 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 TDRD5Q8NAT2 981 aaKnown RBP13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 SLC7A14Q8TBB6 771 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 EDAQ92838 391 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 SENP8Q96LD8 212 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 GOLPH3LQ9H4A5 285 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 PDE11AQ9HCR9 933 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 RBAKQ9NYW8 714 aaPredicted RBP13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 NOTCH4Q99466 2003 aa13.79□□□□□ -0.2
PRPF40A-203ENST00000448428 DOCK8Q8NF50 2099 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 CLIC2O15247 247 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 CCL16O15467 120 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 N4BP1O75113 896 aaKnown RBP13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 ZNF202O95125 648 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 PAX3P23760 479 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 ZXDAP98168 799 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 TFAMQ00059 246 aaKnown RBP13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 YWHAHQ04917 246 aaPredicted RBP13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 STK4Q13043 487 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 BMT2Q1RMZ1 405 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 KMT5BQ4FZB7 885 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 SCARA3Q6AZY7 606 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 ZNF280DQ6N043 979 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 OTOP3Q7RTS5 596 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 GRASPQ7Z6J2 395 aaPredicted RBP13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 USP37Q86T82 979 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 CBWD2Q8IUF1 395 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 PLCD3Q8N3E9 789 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 CACTINQ8WUQ7 758 aaKnown RBP13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 ACSF2Q96CM8 615 aaPredicted RBP13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 BORCS6Q96GS4 357 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 FAM84AQ96KN4 292 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 AGPAT3Q9NRZ7 376 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 HSPBP1Q9NZL4 362 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 CLUHO75153 1309 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 UBE4BO95155 1302 aa13.78□□□□□ -0.2
PRPF40A-203ENST00000448428 ZNF233A6NK53 670 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 SEC24AO95486 1093 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 MYL1P05976 194 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 ASGR2P07307 311 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 ATF2P15336 505 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 TYMPP19971 482 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 HOXA9P31269 272 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 SNRPFP62306 86 aaKnown RBP13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 PSMD2Q13200 908 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 PTPN21Q16825 1174 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 KNOP1Q1ED39 458 aaKnown RBP13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 TPGS2Q68CL5 300 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 KRBA2Q6ZNG9 492 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 RTL10Q7L3V2 364 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 TCEAL8Q8IYN2 117 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 RDH13Q8NBN7 331 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 KIAA0895Q8NCT3 520 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 MYADMQ96S97 322 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 KIAA1586Q9HCI6 787 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 EXOC1Q9NV70 894 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 POLIQ9UNA4 740 aa13.77□□□□□ -0.21
PRPF40A-203ENST00000448428 TSC2P49815 1807 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 ARHGEF37A1IGU5 675 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 CYB561D2O14569 222 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 PRRG1O14668 218 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 RPN1P04843 607 aaKnown RBP13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 ITGB3P05106 788 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 OR4Q2P0C623 313 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 PRR29P0C7W0 189 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 ODC1P11926 461 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 POLR2BP30876 1174 aaKnown RBP13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 GBP2P32456 591 aaPredicted RBP13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 ELF1P32519 619 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 TAF6P49848 677 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 CYP2J2P51589 502 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 NTHL1P78549 312 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 ADCY1Q08828 1119 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 OVOS1Q6IE37 1185 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 RNF19BQ6ZMZ0 732 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 HS2ST1Q7LGA3 356 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 CSGALNACT2Q8N6G5 542 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 C1orf127Q8N9H9 656 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 CXorf38Q8TB03 319 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 OXCT2Q9BYC2 517 aaPredicted RBP13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 CYP4F11Q9HBI6 524 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 INTS13Q9NVM9 706 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 HCFC1R1Q9NWW0 138 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 DNMT3BQ9UBC3 853 aaKnown RBP13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 AGAP1Q9UPQ3 857 aa13.76□□□□□ -0.21
PRPF40A-203ENST00000448428 TECTAO75443 2155 aa13.75□□□□□ -0.21
PRPF40A-203ENST00000448428 PTPRJQ12913 1337 aa13.75□□□□□ -0.21
PRPF40A-203ENST00000448428 OR6C75A6NL08 312 aa13.75□□□□□ -0.21
PRPF40A-203ENST00000448428 PRR33A8MZF0 331 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms