RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 RECQLP46063 649 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 TPI1P60174 286 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 CDR2Q01850 454 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ACAD10Q6JQN1 1059 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 SLC27A1Q6PCB7 646 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 DLK2Q6UY11 383 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ZNF512Q96ME7 567 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 HSD17B14Q9BPX1 270 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 TJP2Q9UDY2 1190 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 NAGPAQ9UK23 515 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 NRCAMQ92823 1304 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 GTPBP10A4D1E9 387 aaKnown RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 GOLGA8MH3BSY2 632 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 C2CD2LO14523 706 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 RASGRF2O14827 1237 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 HOXA2O43364 376 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 PEX10O60683 326 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 KCNA1Q09470 495 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 GPS1Q13098 491 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ITGB3BPQ13352 177 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ANKRD20A3Q5VUR7 823 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 TADA2BQ86TJ2 420 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 CDKL3Q8IVW4 592 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 SPATA4Q8NEY3 305 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 TTC1Q99614 292 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 FSD1LQ9BXM9 530 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 TRPC7Q9HCX4 862 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ABI2Q9NYB9 513 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 SPEF2Q9C093 1822 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 SH3BP5O60239 455 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 KRT14P02533 472 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 MMEP08473 750 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 CYP11B1P15538 503 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 COMTP21964 271 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 AKAP5P24588 427 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 CASP8Q14790 479 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 MAPRE1Q15691 268 aaKnown RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 DCAF6Q58WW2 860 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 DEFB128Q7Z7B8 93 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ZNF710Q8N1W2 664 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 PPP1R13LQ8WUF5 828 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 UBE2Q2Q8WVN8 375 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 MS4A14Q96JA4 679 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 INPP4AQ96PE3 977 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 CAPS2Q9BXY5 557 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 SP110Q9HB58 689 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 TFR2Q9UP52 801 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 CRYBG1Q9Y4K1 1723 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 ESYT3A0FGR9 886 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 F5H423 210 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-213ENST00000448038 SPATA31C1P0DKV0 1188 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 CASP5P51878 434 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 DEUP1Q05D60 604 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 GLIS3Q8NEA6 775 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 FEZF2Q8TBJ5 459 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 ASAP3Q8TDY4 903 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 PDGFCQ9NRA1 345 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 METTL5Q9NRN9 209 aaKnown RBP7.81□□□□□ -1.16
SYNE1-213ENST00000448038 INTS9Q9NV88 658 aaKnown RBP7.81□□□□□ -1.16
SYNE1-213ENST00000448038 WDR70Q9NW82 654 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 NHSL1Q5SYE7 1610 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 C5P01031 1676 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 ANKRD63C9JTQ0 380 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 MT-ND3P03897 115 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 HMBSP08397 361 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 VDRP11473 427 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 GLRA2P23416 452 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 RAP1GAPP47736 663 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 ZNF131P52739 623 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 KRT17Q04695 432 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 EFHC1Q5JVL4 640 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 PLPPR4Q7Z2D5 763 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 C4orf32Q8N8J7 132 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 PDCD6IPQ8WUM4 868 aaKnown RBP7.81□□□□□ -1.16
SYNE1-213ENST00000448038 DEPDC1BQ8WUY9 529 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 DNAJC19Q96DA6 116 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 MMTAG2Q9BU76 263 aaKnown RBP7.81□□□□□ -1.16
SYNE1-213ENST00000448038 PPP1R12CQ9BZL4 782 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 THAP2Q9H0W7 228 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 BTBD7Q9P203 1132 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 AMACRQ9UHK6 382 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 INTUQ9ULD6 942 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 KIAA1257Q9ULG3 409 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 ALG6Q9Y672 507 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 COL16A1Q07092 1604 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-213ENST00000448038 FAM187AA6NFU0 413 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 F8VZ95 297 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 ATICP31939 592 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 IFNAR2P48551 515 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 EIF3EP60228 445 aaKnown RBP7.81□□□□□ -1.16
SYNE1-213ENST00000448038 CAV1Q03135 178 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 FBXO38Q6PIJ6 1188 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 ADGRF2Q8IZF7 708 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 PPP2R3CQ969Q6 453 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 CISHQ9NSE2 258 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 INTS13Q9NVM9 706 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 EHD2Q9NZN4 543 aa7.81□□□□□ -1.16
SYNE1-213ENST00000448038 GTF3C4Q9UKN8 822 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms