RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ATP9AO75110 1047 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 KRT38O76015 456 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 APRTP07741 180 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 CXCL8P10145 99 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 RALAP11233 206 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 GNL1P36915 607 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-205ENST00000439160 RGS2P41220 211 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 PPP2R2AP63151 447 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 PPATQ06203 517 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 PLCB4Q15147 1175 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 TRIM42Q8IWZ5 723 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 ZBTB45Q96K62 511 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-205ENST00000439160 OSMRQ99650 979 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 CARD9Q9H257 536 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 ADORA2AP29274 412 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 SULT1E1P49888 294 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 SLC26A2P50443 739 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 SPARCL1Q14515 664 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 HIF1AQ16665 826 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 CATSPERGQ6ZRH7 1159 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 PNKPQ96T60 521 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 METTL5Q9NRN9 209 aaKnown RBP12.96□□□□□ -0.33
TCOF1-205ENST00000439160 CYP39A1Q9NYL5 469 aa12.96□□□□□ -0.33
TCOF1-205ENST00000439160 A0A087WUV0 522 aaPredicted RBP12.96□□□□□ -0.34
TCOF1-205ENST00000439160 PIK3CDO00329 1044 aa12.96□□□□□ -0.34
TCOF1-205ENST00000439160 TBC1D12O60347 775 aa12.96□□□□□ -0.34
TCOF1-205ENST00000439160 CDKL3Q8IVW4 592 aaPredicted RBP12.96□□□□□ -0.34
TCOF1-205ENST00000439160 EFCAB13Q8IY85 973 aa12.96□□□□□ -0.34
TCOF1-205ENST00000439160 AGAP3Q96P47 875 aa12.96□□□□□ -0.34
TCOF1-205ENST00000439160 RBM15Q96T37 977 aaKnown RBP eCLIP12.96□□□□□ -0.34
TCOF1-205ENST00000439160 INTS13Q9NVM9 706 aa12.96□□□□□ -0.34
TCOF1-205ENST00000439160 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.96□□□□□ -0.34
TCOF1-205ENST00000439160 LMO7Q8WWI1 1683 aa12.96□□□□□ -0.34
TCOF1-205ENST00000439160 GTPBP10A4D1E9 387 aaKnown RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 TADA2AO75478 443 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 CLNS1AP54105 237 aaKnown RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 BYSLQ13895 437 aaKnown RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 MYBPC2Q14324 1141 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 GOLGA7BQ2TAP0 167 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 DCAF6Q58WW2 860 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 FAM117BQ6P1L5 589 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 SPATA2LQ8IUW3 424 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 ATP11CQ8NB49 1132 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 GLT1D1Q96MS3 346 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 RAB6BQ9NRW1 208 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 DONSONQ9NYP3 566 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 BFARQ9NZS9 450 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 PRG3Q9Y2Y8 225 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 C17orf102A2RUQ5 167 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 THPOP40225 353 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 SESN2P58004 480 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 SESN3P58005 492 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 GLB1LQ6UWU2 654 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 BTNL9Q6UXG8 535 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 ACOT1Q86TX2 421 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 MAML1Q92585 1016 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 CGRRF1Q99675 332 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 VPS11Q9H270 941 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 RRAGCQ9HB90 399 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 CHD2O14647 1828 aaKnown RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 CYP3A7-CYP3A51PA0A087WV96 503 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 TRAPPC3O43617 180 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 TFRCP02786 760 aaKnown RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 RBP3P10745 1247 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 CYP3A7P24462 503 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 TMPRSS15P98073 1019 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 GUCY1A3Q02108 690 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 PGBD4Q96DM1 585 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 TRAIPQ9BWF2 469 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 COG7P83436 770 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 SREBF2Q12772 1141 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 KLHL38Q2WGJ6 581 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 CBWD6Q4V339 395 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 CBWD3Q5JTY5 395 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 CBWD5Q5RIA9 395 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 ZNF449Q6P9G9 518 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 SH3BP5LQ7L8J4 393 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 KDELC2Q7Z4H8 507 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 MMGT1Q8N4V1 131 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 C4orf32Q8N8J7 132 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 SPATA18Q8TC71 538 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 ATP6V1E2Q96A05 226 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 RAB3IPQ96QF0 476 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 ZSWIM1Q9BR11 485 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 ERP44Q9BS26 406 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 CISHQ9NSE2 258 aa12.95□□□□□ -0.34
TCOF1-205ENST00000439160 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 UBQLN1Q9UMX0 589 aaKnown RBP12.95□□□□□ -0.34
TCOF1-205ENST00000439160 TXNDC9O14530 226 aa12.94□□□□□ -0.34
TCOF1-205ENST00000439160 TRIM66O15016 1216 aa12.94□□□□□ -0.34
TCOF1-205ENST00000439160 B3GAT3O94766 335 aa12.94□□□□□ -0.34
TCOF1-205ENST00000439160 BAG2O95816 211 aa12.94□□□□□ -0.34
TCOF1-205ENST00000439160 SNHG28P0DPA3 235 aa12.94□□□□□ -0.34
TCOF1-205ENST00000439160 UBA1P22314 1058 aaKnown RBP12.94□□□□□ -0.34
TCOF1-205ENST00000439160 TAF6P49848 677 aa12.94□□□□□ -0.34
TCOF1-205ENST00000439160 TPI1P60174 286 aa12.94□□□□□ -0.34
TCOF1-205ENST00000439160 ERVK-9P63128 1117 aa12.94□□□□□ -0.34
TCOF1-205ENST00000439160 TMEM132BQ14DG7 1078 aa12.94□□□□□ -0.34
TCOF1-205ENST00000439160 ECM1Q16610 540 aa12.94□□□□□ -0.34
TCOF1-205ENST00000439160 BEND6Q5SZJ8 279 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms