RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 YWHAHQ04917 246 aaPredicted RBP16.44■□□□□ 0.22
LIMS3-201ENST00000437679 UVSSAQ2YD98 709 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 RTL10Q7L3V2 364 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 OTOP3Q7RTS5 596 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 EFCAB13Q8IY85 973 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 PLCD3Q8N3E9 789 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 CCDC47Q96A33 483 aaKnown RBP16.44■□□□□ 0.22
LIMS3-201ENST00000437679 ZNF707Q96C28 371 aaPredicted RBP16.44■□□□□ 0.22
LIMS3-201ENST00000437679 ACSF2Q96CM8 615 aaPredicted RBP16.44■□□□□ 0.22
LIMS3-201ENST00000437679 KIAA1586Q9HCI6 787 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 WDR6Q9NNW5 1121 aaKnown RBP16.44■□□□□ 0.22
LIMS3-201ENST00000437679 HSPBP1Q9NZL4 362 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 FBXL5Q9UKA1 691 aa16.44■□□□□ 0.22
LIMS3-201ENST00000437679 ANO9A1A5B4 782 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 KLRC4O43908 158 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 TBC1D4O60343 1298 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 ODC1P11926 461 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 HOXA9P31269 272 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 ELF1P32519 619 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 PSMD2Q13200 908 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 BMT2Q1RMZ1 405 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 KMT5BQ4FZB7 885 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 TMEM31Q5JXX7 168 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 ZDHHC14Q8IZN3 488 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 ZNF461Q8TAF7 563 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 SLC7A14Q8TBB6 771 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 CCDC34Q96HJ3 373 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 SENP8Q96LD8 212 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 OXCT2Q9BYC2 517 aaPredicted RBP16.43■□□□□ 0.22
LIMS3-201ENST00000437679 AGPAT3Q9NRZ7 376 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 CGNQ9P2M7 1197 aaKnown RBP16.43■□□□□ 0.22
LIMS3-201ENST00000437679 TIMM13Q9Y5L4 95 aaPredicted RBP16.43■□□□□ 0.22
LIMS3-201ENST00000437679 DENND4AQ7Z401 1863 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 SCN1AP35498 2009 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 CLUHO75153 1309 aa16.43■□□□□ 0.22
LIMS3-201ENST00000437679 MYO10Q9HD67 2058 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 TGFB1I1O43294 461 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 XYLBO75191 536 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 OAZ2O95190 189 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 TYMPP19971 482 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 TAF6P49848 677 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 SURF1Q15526 300 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 KNOP1Q1ED39 458 aaKnown RBP16.42■□□□□ 0.22
LIMS3-201ENST00000437679 TPGS2Q68CL5 300 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 KRBA2Q6ZNG9 492 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 ZNF560Q96MR9 790 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 GOLPH3LQ9H4A5 285 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 PDE11AQ9HCR9 933 aa16.42■□□□□ 0.22
LIMS3-201ENST00000437679 WDR27A2RRH5 827 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 PRRG1O14668 218 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 CLIC2O15247 247 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 SPTLC1O15269 473 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 CCL16O15467 120 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 GPR37L1O60883 481 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 ABLIM3O94929 683 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 ZNF202O95125 648 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 RPN1P04843 607 aaKnown RBP16.41■□□□□ 0.22
LIMS3-201ENST00000437679 CPB1P15086 417 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 PNPLA4P41247 253 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 CYP2J2P51589 502 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 WNT7BP56706 349 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 STK4Q13043 487 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 SV2CQ496J9 727 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 OVOS1Q6IE37 1185 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 CBWD2Q8IUF1 395 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 XXYLT1Q8NBI6 393 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 GOLGA5Q8TBA6 731 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 ANKRD36BP1Q96IX9 119 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 CYP4F11Q9HBI6 524 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 DSEQ9UL01 958 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 POLIQ9UNA4 740 aa16.41■□□□□ 0.22
LIMS3-201ENST00000437679 R3HCC1Q9Y3T6 440 aaKnown RBP16.41■□□□□ 0.22
LIMS3-201ENST00000437679 DOCK6Q96HP0 2047 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 FAM86C2PA6NEL3 165 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 OR6C75A6NL08 312 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 CYB561D2O14569 222 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 LRG1P02750 347 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 ITGB3P05106 788 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 POU2F2P09086 479 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 TMEM191BP0C7N4 346 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 ATF2P15336 505 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 POLR2BP30876 1174 aaKnown RBP16.4■□□□□ 0.22
LIMS3-201ENST00000437679 GBP2P32456 591 aaPredicted RBP16.4■□□□□ 0.22
LIMS3-201ENST00000437679 SNRNP35Q16560 246 aaKnown RBP16.4■□□□□ 0.22
LIMS3-201ENST00000437679 PTPN21Q16825 1174 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 GRASPQ7Z6J2 395 aaPredicted RBP16.4■□□□□ 0.22
LIMS3-201ENST00000437679 METTL23Q86XA0 190 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 CSGALNACT2Q8N6G5 542 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 C1orf127Q8N9H9 656 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 KIAA0895Q8NCT3 520 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 EDAQ92838 391 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 LIMD1Q9UGP4 676 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 AFF4Q9UHB7 1163 aaKnown RBP16.4■□□□□ 0.22
LIMS3-201ENST00000437679 ITGA11Q9UKX5 1188 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 MAFFQ9ULX9 164 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 AGAP1Q9UPQ3 857 aa16.4■□□□□ 0.22
LIMS3-201ENST00000437679 KIF20AO95235 890 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 TNNC2P02585 160 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 CYP11A1P05108 521 aa16.39■□□□□ 0.21
LIMS3-201ENST00000437679 KRT19P08727 400 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms