RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 IKBKBO14920 756 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 LAMP2P13473 410 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 CCNE1P24864 410 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 CASP5P51878 434 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 STX17P56962 302 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 GRIK3Q13003 919 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 HTR4Q13639 388 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 BMT2Q1RMZ1 405 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 RTP2Q5QGT7 225 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 PRSS55Q6UWB4 352 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-208ENST00000437607 PPP4R3CPQ6ZMV5 832 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 GET4Q7L5D6 327 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-208ENST00000437607 LUZP1Q86V48 1076 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 GPR65Q8IYL9 337 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 GPR152Q8TDT2 470 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 FIZ1Q96SL8 496 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 RPP25Q9BUL9 199 aaKnown RBP13.2□□□□□ -0.3
PTPRF-208ENST00000437607 TRIM6Q9C030 488 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-208ENST00000437607 C2orf40Q9H1Z8 148 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 ST6GALNAC4Q9H4F1 302 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 TBC1D17Q9HA65 648 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.2□□□□□ -0.3
PTPRF-208ENST00000437607 ZDHHC7Q9NXF8 308 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 DLGAP2Q9P1A6 1054 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 EXOC7Q9UPT5 735 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 TICRRQ7Z2Z1 1910 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 PTGESO14684 152 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 ZMYND10O75800 440 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 PRPF6O94906 941 aaKnown RBP13.19□□□□□ -0.3
PTPRF-208ENST00000437607 EDN1P05305 212 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 LRRC63Q05C16 580 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 NCBP1Q09161 790 aaKnown RBP13.19□□□□□ -0.3
PTPRF-208ENST00000437607 STRN3Q13033 797 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 HSP90AA2PQ14568 343 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-208ENST00000437607 NAB2Q15742 525 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 ELMSAN1Q6PJG2 1045 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 EPM2AIP1Q7L775 607 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-208ENST00000437607 HS2ST1Q7LGA3 356 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 ZNF720Q7Z2F6 126 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 HAUS6Q7Z4H7 955 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 SYCP3Q8IZU3 236 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 ENOX1Q8TC92 643 aaKnown RBP13.19□□□□□ -0.3
PTPRF-208ENST00000437607 HASPINQ8TF76 798 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 SCFD1Q8WVM8 642 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 NXPE3Q969Y0 559 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 BICD1Q96G01 975 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 ACCSQ96QU6 501 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 CLSTN3Q9BQT9 956 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 RBSNQ9H1K0 784 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 TMEM206Q9H813 350 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 PIDD1Q9HB75 910 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.19□□□□□ -0.31e-6■■■□□ 16.4
PTPRF-208ENST00000437607 ARHGAP28Q9P2N2 729 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 PARP2Q9UGN5 583 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 FBXW11Q9UKB1 542 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 NUMBLQ9Y6R0 609 aa13.19□□□□□ -0.3
PTPRF-208ENST00000437607 TRIM49BA6NDI0 452 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 STK25O00506 426 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 ADAM12O43184 909 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 CALUO43852 315 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-208ENST00000437607 TADA2AO75478 443 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 PPP1R37O75864 691 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 KIF4AO95239 1232 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 DCNP07585 359 aaKnown RBP13.18□□□□□ -0.3
PTPRF-208ENST00000437607 GLULP15104 373 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 IGFBP6P24592 240 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-208ENST00000437607 EFNA5P52803 228 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 NTHL1P78549 312 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 FOXK2Q01167 660 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 TUSC3Q13454 348 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 IQCB1Q15051 598 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 KNOP1Q1ED39 458 aaKnown RBP13.18□□□□□ -0.3
PTPRF-208ENST00000437607 ZC2HC1CQ53FD0 456 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-208ENST00000437607 CDCA2Q69YH5 1023 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-208ENST00000437607 PHLDB3Q6NSJ2 640 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 MAP4K3Q8IVH8 894 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 DHX40Q8IX18 779 aaKnown RBP13.18□□□□□ -0.3
PTPRF-208ENST00000437607 HACE1Q8IYU2 909 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 TMEM161BQ8NDZ6 487 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 GOLGA5Q8TBA6 731 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 LNX1Q8TBB1 728 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-208ENST00000437607 FGF14Q92915 247 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 FZD8Q9H461 694 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 SLC2A4RGQ9NR83 387 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 USP20Q9Y2K6 914 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 NFE2L3Q9Y4A8 694 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 R4GN57 208 aa13.18□□□□□ -0.3
PTPRF-208ENST00000437607 RALGAPA1Q6GYQ0 2036 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 KIF26AQ9ULI4 1882 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-208ENST00000437607 CASTOR2A6NHX0 329 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 HNRNPDLO14979 420 aaKnown RBP13.17□□□□□ -0.3
PTPRF-208ENST00000437607 FGFR1OPO95684 399 aaKnown RBP13.17□□□□□ -0.3
PTPRF-208ENST00000437607 ID4P47928 161 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 GTF2BQ00403 316 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 FAM187BQ17R55 369 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 SPATA1Q5VX52 437 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 CENPPQ6IPU0 288 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 TTI2Q6NXR4 508 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 FOXR2Q6PJQ5 311 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 PARM1Q6UWI2 310 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms