RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ARID2Q68CP9 1835 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 K7ERI5 159 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 HARSP12081 509 aaKnown RBP12.53□□□□□ -0.4
CD44-209ENST00000433892 KRT10P13645 584 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 TCF4P15884 667 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 ATP4AP20648 1035 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 RPL7AP62424 266 aaKnown RBP12.53□□□□□ -0.4
CD44-209ENST00000433892 TMEM132BQ14DG7 1078 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 SNCBQ16143 134 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 ZFYVE27Q5T4F4 411 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 NUGGCQ68CJ6 796 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 PLEKHA7Q6IQ23 1121 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 SAMD7Q7Z3H4 446 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 PLCD3Q8N3E9 789 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 MSTO1Q9BUK6 570 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 CYP39A1Q9NYL5 469 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 FBXO40Q9UH90 709 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 STYXL1Q9Y6J8 313 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 NFASCO94856 1347 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 GSTTP1A0A1W2PQM5 241 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 EDN1P05305 212 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 CLTAP09496 248 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 SUPT20HL2P0C7V6 817 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 POTEJP0CG39 1038 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 GLRA2P23416 452 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 NOP14P78316 857 aaKnown RBP12.53□□□□□ -0.4
CD44-209ENST00000433892 SUPT20HL1Q3ZLR7 823 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 PRAMEF18Q5VWM3 479 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 CYP4F22Q6NT55 531 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 HIBCHQ6NVY1 386 aaPredicted RBP12.53□□□□□ -0.4
CD44-209ENST00000433892 TRIM72Q6ZMU5 477 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 FAM228AQ86W67 206 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 PHF13Q86YI8 300 aaPredicted RBP12.53□□□□□ -0.4
CD44-209ENST00000433892 SRRM1Q8IYB3 904 aaKnown RBP12.53□□□□□ -0.4
CD44-209ENST00000433892 EXD1Q8NHP7 514 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 DEPTORQ8TB45 409 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 CDHR1Q96JP9 859 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 VPS33BQ9H267 617 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 A1CFQ9NQ94 594 aaKnown RBP12.53□□□□□ -0.4
CD44-209ENST00000433892 TPX2Q9ULW0 747 aaKnown RBP12.53□□□□□ -0.4
CD44-209ENST00000433892 NAALADL1Q9UQQ1 740 aa12.53□□□□□ -0.4
CD44-209ENST00000433892 USP15Q9Y4E8 981 aaPredicted RBP12.53□□□□□ -0.4
CD44-209ENST00000433892 RGPD3A6NKT7 1758 aaPredicted RBP12.52□□□□□ -0.4
CD44-209ENST00000433892 RGPD4Q7Z3J3 1758 aa12.52□□□□□ -0.4
CD44-209ENST00000433892 SPATA31C2B4DYI2 1134 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 KLRC2P26717 231 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 NFX1Q12986 1120 aaKnown RBP12.52□□□□□ -0.41
CD44-209ENST00000433892 ZKSCAN8Q15776 578 aaPredicted RBP12.52□□□□□ -0.41
CD44-209ENST00000433892 P3H1Q32P28 736 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 GNPTABQ3T906 1256 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 GLIS1Q8NBF1 620 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 ZNF280CQ8ND82 737 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 JDP2Q8WYK2 163 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 VCPIP1Q96JH7 1222 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 PORCNQ9H237 461 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 GINM1Q9NU53 330 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 PARVAQ9NVD7 372 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 HACL1Q9UJ83 578 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 SCINQ9Y6U3 715 aa12.52□□□□□ -0.41
CD44-209ENST00000433892 TCEA3O75764 348 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 OAS1P00973 400 aaKnown RBP12.51□□□□□ -0.41
CD44-209ENST00000433892 ZSCAN5DPP0CG00 497 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 ATF7P17544 494 aaPredicted RBP12.51□□□□□ -0.41
CD44-209ENST00000433892 ELF3P78545 371 aaPredicted RBP12.51□□□□□ -0.41
CD44-209ENST00000433892 NCOA4Q13772 614 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 FEZF2Q8TBJ5 459 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 CKAP2Q8WWK9 683 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 RBM15Q96T37 977 aaKnown RBP eCLIP12.51□□□□□ -0.41
CD44-209ENST00000433892 FHDC1Q9C0D6 1143 aaPredicted RBP12.51□□□□□ -0.41
CD44-209ENST00000433892 DNPEPQ9ULA0 475 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 AGAP1Q9UPQ3 857 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 COL11A1P12107 1806 aaPredicted RBP12.51□□□□□ -0.41
CD44-209ENST00000433892 PCNTO95613 3336 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 A0A0B4J269 797 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 CDH16O75309 829 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 UBOX5O94941 541 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 OATP04181 439 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 GSTA1P08263 222 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 PTPRAP18433 802 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 ABCD1P33897 745 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 RDXP35241 583 aaKnown RBP12.51□□□□□ -0.41
CD44-209ENST00000433892 MAGEA4P43358 317 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 NAMPTP43490 491 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 C1QBPQ07021 282 aaKnown RBP12.51□□□□□ -0.41
CD44-209ENST00000433892 FSTL1Q12841 308 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 HP1BP3Q5SSJ5 553 aaPredicted RBP12.51□□□□□ -0.41
CD44-209ENST00000433892 TMEM63BQ5T3F8 832 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 SLFN12LQ6IEE8 588 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 CEP57Q86XR8 500 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 SCYL3Q8IZE3 742 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 CCDC63Q8NA47 563 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 BBOF1Q8ND07 529 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 ZNF606Q8WXB4 792 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 SLC7A3Q8WY07 619 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 ACSF2Q96CM8 615 aaPredicted RBP12.51□□□□□ -0.41
CD44-209ENST00000433892 FAM212AQ96EL1 285 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 WRNIP1Q96S55 665 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 CGRRF1Q99675 332 aa12.51□□□□□ -0.41
CD44-209ENST00000433892 DHX33Q9H6R0 707 aaKnown RBP12.51□□□□□ -0.41
CD44-209ENST00000433892 ZNF302Q9NR11 478 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms