RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 UBOX5O94941 541 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 NQO1P15559 274 aaKnown RBP11.98□□□□□ -0.49
USP4-205ENST00000431357 KLRC2P26717 231 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 GNA15P30679 374 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 NF2P35240 595 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 BNIP1Q12981 228 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 MAMLD1Q13495 774 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 RNF43Q68DV7 783 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 SMYD5Q6GMV2 418 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 TAS1R3Q7RTX0 852 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 CEP57Q86XR8 500 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 FEZF2Q8TBJ5 459 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 C11orf70Q9BRQ4 267 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 HEMGNQ9BXL5 484 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 POLR3FQ9H1D9 316 aaPredicted RBP11.98□□□□□ -0.49
USP4-205ENST00000431357 PPCSQ9HAB8 311 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 XPNPEP1Q9NQW7 623 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 PARVAQ9NVD7 372 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 PRKAG3Q9UGI9 489 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 AGO2Q9UKV8 859 aaKnown RBP11.98□□□□□ -0.49
USP4-205ENST00000431357 CNTN6Q9UQ52 1028 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 PCDHB4Q9Y5E5 795 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 TLR3O15455 904 aaKnown RBP11.98□□□□□ -0.49
USP4-205ENST00000431357 STAM2O75886 525 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 PIGRP01833 764 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 NEFHP12036 1026 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 CREB1P16220 341 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 KCNA2P16389 499 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 MAGEA4P43358 317 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 SLC18A1P54219 525 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 TAS2R40P59535 323 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 COPS2P61201 443 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 NCALDP61601 193 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 IL9RQ01113 521 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 MCL1Q07820 350 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 CCDC15Q0P6D6 951 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 ACVR2BQ13705 512 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 BAATQ14032 418 aaPredicted RBP11.98□□□□□ -0.49
USP4-205ENST00000431357 XKR3Q5GH77 459 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 TDRD10Q5VZ19 366 aaKnown RBP11.98□□□□□ -0.49
USP4-205ENST00000431357 SWSAP1Q6NVH7 229 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 GSTA5Q7RTV2 222 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 TBC1D1Q86TI0 1168 aaPredicted RBP11.98□□□□□ -0.49
USP4-205ENST00000431357 TDRPQ86YL5 185 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 TTLL6Q8N841 843 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 TGS1Q96RS0 853 aaKnown RBP11.98□□□□□ -0.49
USP4-205ENST00000431357 MAF1Q9H063 256 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 ECT2Q9H8V3 914 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 RXFP1Q9HBX9 757 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 RNF146Q9NTX7 359 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 EURLQ9NYK6 297 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 KLHL14Q9P2G3 628 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 CTNNAL1Q9UBT7 734 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 SEPT9Q9UHD8 586 aaPredicted RBP11.98□□□□□ -0.49
USP4-205ENST00000431357 BAIAP2L1Q9UHR4 511 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 ZNRF3Q9ULT6 936 aa11.98□□□□□ -0.49
USP4-205ENST00000431357 GSTTP1A0A1W2PQM5 241 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 DNALI1O14645 258 aaPredicted RBP11.97□□□□□ -0.49
USP4-205ENST00000431357 CALCAP01258 141 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 DSG3P32926 999 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 SKIV2L2P42285 1042 aaKnown RBP11.97□□□□□ -0.49
USP4-205ENST00000431357 VPS41P49754 854 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 SOX10P56693 466 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 MTFR1Q15390 333 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 LRRC38Q5VT99 294 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 MIS18BP1Q6P0N0 1132 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 ANKS1BQ7Z6G8 1248 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 NSUN6Q8TEA1 469 aaKnown RBP11.97□□□□□ -0.49
USP4-205ENST00000431357 RPAP3Q9H6T3 665 aaPredicted RBP11.97□□□□□ -0.49
USP4-205ENST00000431357 JPH1Q9HDC5 661 aaPredicted RBP11.97□□□□□ -0.49
USP4-205ENST00000431357 DNAJC17Q9NVM6 304 aaKnown RBP11.97□□□□□ -0.49
USP4-205ENST00000431357 SENP1Q9P0U3 644 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 SLC9A2Q9UBY0 812 aa11.97□□□□□ -0.49
USP4-205ENST00000431357 DRG1Q9Y295 367 aaKnown RBP11.97□□□□□ -0.49
USP4-205ENST00000431357 FAM47DPA6NHR8 397 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 VWA5AO00534 786 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 WNT10BO00744 389 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 TJP3O95049 919 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 CLTAP09496 248 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 HSPA1LP34931 641 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 OAZ1P54368 228 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 PRKCEQ02156 737 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 NFX1Q12986 1120 aaKnown RBP11.96□□□□□ -0.49
USP4-205ENST00000431357 TNFAIP1Q13829 316 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 MPP2Q14168 576 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 EAPPQ56P03 285 aaPredicted RBP11.96□□□□□ -0.49
USP4-205ENST00000431357 ABHD15Q6UXT9 468 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 PHLDB2Q86SQ0 1253 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 SRRM1Q8IYB3 904 aaKnown RBP11.96□□□□□ -0.49
USP4-205ENST00000431357 CYP4X1Q8N118 509 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 TCP11Q8WWU5 503 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 MAML1Q92585 1016 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 ELMO3Q96BJ8 720 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 RBM15Q96T37 977 aaKnown RBP eCLIP11.96□□□□□ -0.49
USP4-205ENST00000431357 CGRRF1Q99675 332 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 PAIP2Q9BPZ3 127 aaKnown RBP11.96□□□□□ -0.49
USP4-205ENST00000431357 AGAP1Q9UPQ3 857 aa11.96□□□□□ -0.49
USP4-205ENST00000431357 RASA4BC9J798 803 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 MAGEB2O15479 319 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 RASA4O43374 803 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms