RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 LACTBL1A8MY62 500 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 NRG2O14511 850 aaPredicted RBP15.78■□□□□ 0.12
SDC1-204ENST00000429035 CENPBP07199 599 aaPredicted RBP15.78■□□□□ 0.12
SDC1-204ENST00000429035 PLCG1P19174 1290 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 FCARP24071 287 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 MCM6Q14566 821 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 KARSQ15046 597 aaKnown RBP15.78■□□□□ 0.12
SDC1-204ENST00000429035 TEAD2Q15562 447 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 ARSHQ5FYA8 562 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 POTEHQ6S545 545 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 ZNF852Q6ZMS4 543 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 DNASE1L2Q92874 299 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 ASB16Q96NS5 453 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 PLEKHA5Q9HAU0 1116 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 PARVGQ9HBI0 331 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 CEP72Q9P209 647 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 MRPS17Q9Y2R5 130 aaKnown RBP15.78■□□□□ 0.12
SDC1-204ENST00000429035 SCN1AP35498 2009 aa15.78■□□□□ 0.12
SDC1-204ENST00000429035 NUP210Q8TEM1 1887 aaPredicted RBP15.78■□□□□ 0.12
SDC1-204ENST00000429035 TTC26A0AVF1 554 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 PPEF2O14830 753 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 OGTO15294 1046 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 NCAM2O15394 837 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 LRPAP1P30533 357 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 GDI1P31150 447 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 MAGEA9P43362 315 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 LARP1BQ659C4 914 aaKnown RBP15.77■□□□□ 0.12
SDC1-204ENST00000429035 TSSK4Q6SA08 328 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 MAML2Q8IZL2 1156 aaPredicted RBP15.77■□□□□ 0.12
SDC1-204ENST00000429035 KCTD17Q8N5Z5 321 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 BEST2Q8NFU1 509 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 ZSCAN18Q8TBC5 510 aaPredicted RBP15.77■□□□□ 0.12
SDC1-204ENST00000429035 AK8Q96MA6 479 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 MSTO1Q9BUK6 570 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 TRMT61BQ9BVS5 477 aaKnown RBP15.77■□□□□ 0.12
SDC1-204ENST00000429035 NCDNQ9UBB6 729 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 TBX20Q9UMR3 447 aa15.77■□□□□ 0.12
SDC1-204ENST00000429035 VPS37CA5D8V6 355 aaPredicted RBP15.76■□□□□ 0.11
SDC1-204ENST00000429035 M0QZQ0 153 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 ODC1P11926 461 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 VIPR2P41587 438 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 CDR1P51861 262 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 GRIN1Q05586 938 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 PLD1Q13393 1074 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 ENOX2Q16206 610 aaKnown RBP15.76■□□□□ 0.11
SDC1-204ENST00000429035 KYAT1Q16773 422 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 OVOS1Q6IE37 1185 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 JADE1Q6IE81 842 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 VITQ6UXI7 678 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 YAF2Q8IY57 180 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 DCLK2Q8N568 766 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 LEMD2Q8NC56 503 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 LRRC15Q8TF66 581 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 RAD54LQ92698 747 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 SMARCD2Q92925 531 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 ZSWIM3Q96MP5 696 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 OSBPL6Q9BZF3 934 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.76■□□□□ 0.11
SDC1-204ENST00000429035 F5P12259 2224 aa15.76■□□□□ 0.11
SDC1-204ENST00000429035 ZNF638Q14966 1978 aaKnown RBP15.76■□□□□ 0.11
SDC1-204ENST00000429035 KIF26AQ9ULI4 1882 aaPredicted RBP15.76■□□□□ 0.11
SDC1-204ENST00000429035 A0A1W2PRU2 124 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 OR6C75A6NL08 312 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 TRAK2O60296 914 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 SOAT2O75908 522 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 NFICP08651 508 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 PSMC3P17980 439 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 CYP3A5P20815 502 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 NMT1P30419 496 aaKnown RBP15.75■□□□□ 0.11
SDC1-204ENST00000429035 ALDH1A3P47895 512 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 EPHB3P54753 998 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 DUSP4Q13115 394 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 TMEM132DQ14C87 1099 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 SHKBP1Q8TBC3 707 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 FAM200AQ8TCP9 573 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 DEPDC1BQ8WUY9 529 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 ATRIPQ8WXE1 791 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 RUBCNQ92622 972 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 IRF7Q92985 503 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 TMEM209Q96SK2 561 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 CRISPLD1Q9H336 500 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 BLOC1S4Q9NUP1 217 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 FBXO4Q9UKT5 387 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.75■□□□□ 0.11
SDC1-204ENST00000429035 PIAS3Q9Y6X2 628 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 OTOGLQ3ZCN5 2332 aa15.75■□□□□ 0.11
SDC1-204ENST00000429035 NCANO14594 1321 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 MTMR11A4FU01 709 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 HEPACAM2A8MVW5 462 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 ZNF263O14978 683 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 SPTLC1O15269 473 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 SLC26A4O43511 780 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 MOSPD3O75425 235 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 BMP15O95972 392 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 AARSP49588 968 aaKnown RBP eCLIP15.74■□□□□ 0.11
SDC1-204ENST00000429035 MCM2P49736 904 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 FOXK2Q01167 660 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 SF3A1Q15459 793 aaKnown RBP15.74■□□□□ 0.11
SDC1-204ENST00000429035 ARMCX5Q6P1M9 558 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 GPIHBP1Q8IV16 184 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms