RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SYT2Q8N9I0 419 aaPredicted RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 SEPT11Q9NVA2 429 aaKnown RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 ETNK2Q9NVF9 386 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 ATAD3AQ9NVI7 634 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 CYP39A1Q9NYL5 469 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 CTNNAL1Q9UBT7 734 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 CPA4Q9UI42 421 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 POTEB3A0JP26 581 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 POTECB2RU33 542 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 TLR3O15455 904 aaKnown RBP10.35□□□□□ -0.75
USP54-205ENST00000424265 TRAPPC3O43617 180 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 ZCCHC18P0CG32 403 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 YWHABP31946 246 aaKnown RBP10.35□□□□□ -0.75
USP54-205ENST00000424265 CCNFP41002 786 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 TUBA3CQ13748 450 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 ZNF484Q5JVG2 852 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 POTEBQ6S5H4 581 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 FAM47EQ6ZV65 393 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 RNF180Q86T96 592 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 DCLK2Q8N568 766 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 PCSK9Q8NBP7 692 aaKnown RBP10.35□□□□□ -0.75
USP54-205ENST00000424265 RAPGEF5Q92565 580 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 STAMQ92783 540 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 AGO4Q9HCK5 861 aaKnown RBP10.35□□□□□ -0.75
USP54-205ENST00000424265 FADS3Q9Y5Q0 445 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 LINC00854A0A1B0GVQ3 168 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 MEIS1O00470 390 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 CBFA2T3O75081 653 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 RFC1P35251 1148 aaPredicted RBP10.35□□□□□ -0.75
USP54-205ENST00000424265 CYTH1Q15438 398 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 ZCWPW2Q504Y3 356 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 CCT6BQ92526 530 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 SLC5A5Q92911 643 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 APBA2Q99767 749 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 ETNK1Q9HBU6 452 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 NDUFA13Q9P0J0 144 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 LRRC37AA6NMS7 1700 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 AP3B1O00203 1094 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 HNRNPDLO14979 420 aaKnown RBP10.35□□□□□ -0.75
USP54-205ENST00000424265 CALB2P22676 271 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 PSMC2P35998 433 aaKnown RBP10.35□□□□□ -0.75
USP54-205ENST00000424265 HPCAP84074 193 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 PPP2R5CQ13362 524 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 ZNF268Q14587 947 aaPredicted RBP10.35□□□□□ -0.75
USP54-205ENST00000424265 DCAF17Q5H9S7 520 aaPredicted RBP10.35□□□□□ -0.75
USP54-205ENST00000424265 LDLRAD1Q5T700 205 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 CYFIP1Q7L576 1253 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 NELFCDQ8IXH7 590 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 GUF1Q8N442 669 aaKnown RBP10.35□□□□□ -0.75
USP54-205ENST00000424265 RAB3IL1Q8TBN0 382 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 CEP63Q96MT8 703 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 COQ7Q99807 217 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 SMIM22K7EJ46 135 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 TTI1O43156 1089 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 ATP9BO43861 1147 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 B3GALNT1O75752 331 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 TNNC2P02585 160 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 ADORA2AP29274 412 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 KCNJ2P63252 427 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 TMEM132BQ14DG7 1078 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 MAP3K21Q5TCX8 1036 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 ARRDC4Q8NCT1 418 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 PIGOQ8TEQ8 1089 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 MMRN2Q9H8L6 949 aa10.35□□□□□ -0.75
USP54-205ENST00000424265 ASLP04424 464 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 PORP16435 677 aaPredicted RBP10.34□□□□□ -0.75
USP54-205ENST00000424265 POLR2EP19388 210 aaKnown RBP10.34□□□□□ -0.75
USP54-205ENST00000424265 RBL2Q08999 1139 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 WASHC5Q12768 1159 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 MAP2K5Q13163 448 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 VSIG10LQ86VR7 867 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 INTS9Q9NV88 658 aaKnown RBP10.34□□□□□ -0.75
USP54-205ENST00000424265 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP54-205ENST00000424265 MOSPD1Q9UJG1 213 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 NFU1Q9UMS0 254 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 ANKRD62A6NC57 917 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 FAM205CA6NFA0 338 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 BTBD19C9JJ37 291 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 MATN2O00339 956 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 WFS1O76024 890 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 SUPT20HL2P0C7V6 817 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 MXI1P50539 228 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 SP3Q02447 781 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 KCTD21Q4G0X4 260 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 TMCO4Q5TGY1 634 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 SLC15A3Q8IY34 581 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 C4orf19Q8IY42 314 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 LRRC43Q8N309 656 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 STK32AQ8WU08 396 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 MRPL46Q9H2W6 279 aaKnown RBP10.34□□□□□ -0.75
USP54-205ENST00000424265 TCF7P36402 384 aaPredicted RBP10.34□□□□□ -0.75
USP54-205ENST00000424265 DNA2P51530 1060 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 TC2NQ8N9U0 490 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 LSM14AQ8ND56 463 aaKnown RBP10.34□□□□□ -0.75
USP54-205ENST00000424265 TMEM106CQ9BVX2 250 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 SPATA16Q9BXB7 569 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 DBR1Q9UK59 544 aaKnown RBP10.34□□□□□ -0.75
USP54-205ENST00000424265 HBS1LQ9Y450 684 aaKnown RBP10.34□□□□□ -0.75
USP54-205ENST00000424265 UBIAD1Q9Y5Z9 338 aa10.34□□□□□ -0.75
USP54-205ENST00000424265 ARHGAP10A1A4S6 786 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms