RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 LZTS1Q9Y250 596 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 NUB1Q9Y5A7 615 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 STAU1O95793 577 aaKnown RBP18.29■□□□□ 0.52
COL7A1-202ENST00000422991 CST3P01034 146 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-202ENST00000422991 PRKCSHP14314 528 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-202ENST00000422991 PAX3P23760 479 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 BRCC3P46736 316 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 MYL6P60660 151 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 KRT17Q04695 432 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 MYO1EQ12965 1108 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 SV2CQ496J9 727 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 FBXL13Q8NEE6 735 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 HPDLQ96IR7 371 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 SUSD3Q96L08 255 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 HERC2P3Q9BVR0 1158 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 GPR62Q9BZJ7 368 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 ALG13Q9NP73 1137 aaKnown RBP18.29■□□□□ 0.52
COL7A1-202ENST00000422991 STK39Q9UEW8 545 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 COQ4Q9Y3A0 265 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 R3HCC1Q9Y3T6 440 aaKnown RBP18.29■□□□□ 0.52
COL7A1-202ENST00000422991 EYSQ5T1H1 3165 aa18.29■□□□□ 0.52
COL7A1-202ENST00000422991 GOLGA6L19H0YKK7 550 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 I3L4J1 428 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 P4HA2O15460 535 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 FOSL2P15408 326 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 CDK11BP21127 795 aaKnown RBP18.28■□□□□ 0.52
COL7A1-202ENST00000422991 ATICP31939 592 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 TPM4P67936 248 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 UBE3AQ05086 875 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 ELAVL2Q12926 359 aaKnown RBP18.28■□□□□ 0.52
COL7A1-202ENST00000422991 GPM6BQ13491 265 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 VWA3BQ502W6 1294 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 TIGD5Q53EQ6 642 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 APTXQ7Z2E3 356 aaKnown RBP18.28■□□□□ 0.52
COL7A1-202ENST00000422991 ANKRD20A12PQ8NF67 263 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 SPPL3Q8TCT6 385 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 GDPD5Q8WTR4 605 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 SEMA4DQ92854 862 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 NDST4Q9H3R1 872 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 VRTNQ9H8Y1 702 aa18.28■□□□□ 0.52
COL7A1-202ENST00000422991 KPNA7A9QM74 516 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 M0QZQ0 153 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 GRM6O15303 877 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 TRAPPC3O43617 180 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 ASS1P00966 412 aaKnown RBP18.27■□□□□ 0.52
COL7A1-202ENST00000422991 SOD2P04179 222 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 DNAJB1P25685 340 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 COPB1P53618 953 aaKnown RBP18.27■□□□□ 0.52
COL7A1-202ENST00000422991 ZNF699Q32M78 642 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 RNF214Q8ND24 703 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 TAF4BQ92750 862 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 SENP8Q96LD8 212 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 RAB20Q9NX57 234 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 GDAP2Q9NXN4 497 aa18.27■□□□□ 0.52
COL7A1-202ENST00000422991 GTPBP10A4D1E9 387 aaKnown RBP18.26■□□□□ 0.51
COL7A1-202ENST00000422991 LRRC10BA6NIK2 292 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 LPXNO60711 386 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 LRRN2O75325 713 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 TPM2P07951 284 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 FGFR3P22607 806 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 SGSM1Q2NKQ1 1148 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 FAM171A1Q5VUB5 890 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.26■□□□□ 0.51
COL7A1-202ENST00000422991 TAS1R1Q7RTX1 841 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 GAS2L3Q86XJ1 694 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 VPS52Q8N1B4 723 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 POF1BQ8WVV4 589 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 PI4K2AQ9BTU6 479 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 IMPG2Q9BZV3 1241 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 LMAN2LQ9H0V9 348 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 ZBP1Q9H171 429 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 VPS16Q9H269 839 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 PUF60Q9UHX1 559 aaKnown RBP18.26■□□□□ 0.51
COL7A1-202ENST00000422991 PCDHB8Q9UN66 801 aa18.26■□□□□ 0.51
COL7A1-202ENST00000422991 MYO9BQ13459 2157 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 LGALS16A8MUM7 142 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 RFXAPO00287 272 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 SYN3O14994 580 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 ODC1P11926 461 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 TKTP29401 623 aaKnown RBP18.25■□□□□ 0.51
COL7A1-202ENST00000422991 NOP14P78316 857 aaKnown RBP18.25■□□□□ 0.51
COL7A1-202ENST00000422991 CETN1Q12798 172 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 CAMK1Q14012 370 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 USP41Q3LFD5 358 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 RTP2Q5QGT7 225 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 DSTYKQ6XUX3 929 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 MAFAQ8NHW3 353 aaPredicted RBP18.25■□□□□ 0.51
COL7A1-202ENST00000422991 LMO3Q8TAP4 145 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 ELMO3Q96BJ8 720 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 B3GALT6Q96L58 329 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 PRDM12Q9H4Q4 367 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 APOBEC3GQ9HC16 384 aaKnown RBP18.25■□□□□ 0.51
COL7A1-202ENST00000422991 TLR9Q9NR96 1032 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 CHST7Q9NS84 486 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 GCNT4Q9P109 453 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 SNX9Q9Y5X1 595 aa18.25■□□□□ 0.51
COL7A1-202ENST00000422991 ARHGEF37A1IGU5 675 aa18.24■□□□□ 0.51
COL7A1-202ENST00000422991 PES1O00541 588 aaKnown RBP18.24■□□□□ 0.51
COL7A1-202ENST00000422991 CYB561D2O14569 222 aa18.24■□□□□ 0.51
COL7A1-202ENST00000422991 FSCN2O14926 492 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms