RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 DLATP10515 647 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 PTPN4P29074 926 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 SLCO1A2P46721 670 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 KCNJ1P48048 391 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 GCLMP48507 274 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 OCRLQ01968 901 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 MAP3K10Q02779 954 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CYP24A1Q07973 514 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 KRT72Q14CN4 511 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 KYNUQ16719 465 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 NBPF20Q3BBV1 942 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CHSY1Q86X52 802 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CYP4X1Q8N118 509 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 BANK1Q8NDB2 785 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 TMEM161BQ8NDZ6 487 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ZFAND2BQ8WV99 257 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 RBM41Q96IZ5 413 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 IKZF4Q9H2S9 585 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 DCLRE1BQ9H816 532 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 AGO4Q9HCK5 861 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 GINM1Q9NU53 330 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 DNAJB4Q9UDY4 337 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ANAPC7Q9UJX3 599 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ZMYND8Q9ULU4 1186 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 TBX20Q9UMR3 447 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CHKBQ9Y259 395 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 DOCK1Q14185 1865 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 COL11A1P12107 1806 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 BRWD3Q6RI45 1802 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 RASA4BC9J798 803 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 KLF11O14901 512 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 RASA4O43374 803 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 LIASO43766 372 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 AHCYL1O43865 530 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 DKC1O60832 514 aaKnown RBP eCLIP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 DIAPH2O60879 1101 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 PIGRP01833 764 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 T-ENOLP0DO92 83 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ARP10275 920 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CETPP11597 493 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CREB1P16220 341 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 RRM1P23921 792 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 HOXA13P31271 388 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 NAA25Q14CX7 972 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 TAZQ16635 292 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CTC1Q2NKJ3 1217 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 USH1GQ495M9 461 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 LIN9Q5TKA1 542 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 IZUMO3Q5VZ72 239 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF365Q70YC5 407 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 PTF1AQ7RTS3 328 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 MIER3Q7Z3K6 550 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 POLNQ7Z5Q5 900 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ERICH1Q86X53 443 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 MCF2L2Q86YR7 1114 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CCDC125Q86Z20 511 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF276Q8N554 614 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ALLCQ8N6M5 410 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 NLRP7Q8WX94 980 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 TBC1D31Q96DN5 1066 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 OSBPL8Q9BZF1 889 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 MYLK2Q9H1R3 596 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 PCDH9Q9HC56 1237 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 PDLIM7Q9NR12 457 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 IP6K2Q9UHH9 426 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 PHTF1Q9UMS5 762 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 PTPN22Q9Y2R2 807 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 L3MBTL1Q9Y468 752 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CD2APQ9Y5K6 639 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 LCTP09848 1927 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ASTN2O75129 1339 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 A0A1W2PRG0 241 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 TCRBV5S1A1TA0A578 114 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ATP2C2O75185 946 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 CSDE1O75534 798 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 GH1P01241 217 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ICAM1P05362 532 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 DHRS4L1P0CG22 281 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 CDH5P33151 784 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ADCY8P40145 1251 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 PTGER2P43116 358 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 KCNQ4P56696 695 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 PSMC5P62195 406 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 GRM1Q13255 1194 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 PSMD6Q15008 389 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 OASLQ15646 514 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 CAPRIN2Q6IMN6 1127 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 CHADLQ6NUI6 762 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ADGRD1Q6QNK2 874 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 KSR1Q8IVT5 923 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 PPM1KQ8N3J5 372 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 UBR7Q8N806 425 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 MZB1Q8WU39 189 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 C1orf54Q8WWF1 131 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 RBM15Q96T37 977 aaKnown RBP eCLIP6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF518BQ9C0D4 1074 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 ETNK1Q9HBU6 452 aa6.07□□□□□ -1.44
CCDC88A-203ENST00000412148 DDX56Q9NY93 547 aaKnown RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms