RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 AMHR2Q16671 573 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 EEF1DP3Q658K8 133 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 MFSD7Q6UXD7 560 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 CRELD2Q6UXH1 353 aaPredicted RBP14.21□□□□□ -0.13
VPS54-203ENST00000409558 MFSD14AQ96MC6 490 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 SPATA33Q96N06 139 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 EPB41L4BQ9H329 900 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 FAM187AA6NFU0 413 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 ZACNQ401N2 412 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.21□□□□□ -0.13
VPS54-203ENST00000409558 PSPC1Q8WXF1 523 aaKnown RBP14.21□□□□□ -0.13
VPS54-203ENST00000409558 TBC1D31Q96DN5 1066 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 MYPNQ86TC9 1320 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 TCP11X1B4DZS4 312 aa14.21□□□□□ -0.14
VPS54-203ENST00000409558 PODXLO00592 558 aa14.21□□□□□ -0.14
VPS54-203ENST00000409558 CYP1A2P05177 515 aa14.21□□□□□ -0.14
VPS54-203ENST00000409558 ANXA13P27216 316 aa14.21□□□□□ -0.14
VPS54-203ENST00000409558 GCLCP48506 637 aaPredicted RBP14.21□□□□□ -0.14
VPS54-203ENST00000409558 RGS7P49802 495 aa14.21□□□□□ -0.14
VPS54-203ENST00000409558 GAD2Q05329 585 aa14.21□□□□□ -0.14
VPS54-203ENST00000409558 NFIL3Q16649 462 aa14.21□□□□□ -0.14
VPS54-203ENST00000409558 RUBCNQ92622 972 aa14.21□□□□□ -0.14
VPS54-203ENST00000409558 SLC12A6Q9UHW9 1150 aa14.21□□□□□ -0.14
VPS54-203ENST00000409558 TMEM120BA0PK00 339 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 CES2O00748 559 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 P4HA2O15460 535 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 PPFIA2O75334 1257 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 VTNP04004 478 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 KRT15P19012 456 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 RFX1P22670 979 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 MICALCLQ6ZW33 695 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 NIPA1Q7RTP0 329 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 FMNL3Q8IVF7 1028 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 CYP4X1Q8N118 509 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 TCP11Q8WWU5 503 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 UVRAGQ9P2Y5 699 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 CYP2C8P10632 490 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 MAMLD1Q13495 774 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 ZNF699Q32M78 642 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 ZC3H18Q86VM9 953 aaKnown RBP14.2□□□□□ -0.14
VPS54-203ENST00000409558 CCDC13Q8IYE1 715 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 CD248Q9HCU0 757 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 ARHGAP28Q9P2N2 729 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 AKT3Q9Y243 479 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 STK38LQ9Y2H1 464 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 PRKCBP05771 671 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 ALDH5A1P51649 535 aaPredicted RBP14.2□□□□□ -0.14
VPS54-203ENST00000409558 ARSEP51690 589 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 Q3C1V9 767 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 LRIG3Q6UXM1 1119 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 SULF1Q8IWU6 871 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 RPS6KC1Q96S38 1066 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 CISHQ9NSE2 258 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 NRBP2Q9NSY0 501 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 DOCK5Q9H7D0 1870 aa14.2□□□□□ -0.14
VPS54-203ENST00000409558 C4BPAP04003 597 aaKnown RBP14.19□□□□□ -0.14
VPS54-203ENST00000409558 CLTAP09496 248 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 ATP11AP98196 1134 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 TAF5Q15542 800 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 TFAP2BQ92481 460 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 ZBED3Q96IU2 234 aaPredicted RBP14.19□□□□□ -0.14
VPS54-203ENST00000409558 SYNJ2BP-COX16A0A087WUM0 186 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 STBD1O95210 358 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 LYPLA2O95372 231 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 BRAFP15056 766 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 MAPK6Q16659 721 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 TBC1D1Q86TI0 1168 aaPredicted RBP14.19□□□□□ -0.14
VPS54-203ENST00000409558 SESTD1Q86VW0 696 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 ERICH1Q86X53 443 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 KIF2BQ8N4N8 673 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.19□□□□□ -0.14
VPS54-203ENST00000409558 SAMD3Q8N6K7 520 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 CHMP6Q96FZ7 201 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 COX16Q9P0S2 106 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 SPATA31C2B4DYI2 1134 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 TRAPPC3O43617 180 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 NEFHP12036 1026 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 FAXCQ5TGI0 409 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 ZBED8Q8IZ13 594 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 FAM49AQ9H0Q0 323 aaPredicted RBP14.19□□□□□ -0.14
VPS54-203ENST00000409558 SAMD15Q9P1V8 674 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 SYNPO2Q9UMS6 1093 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 LAMA3Q16787 3333 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 SOWAHBA6NEL2 793 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 DKC1O60832 514 aaKnown RBP eCLIP14.19□□□□□ -0.14
VPS54-203ENST00000409558 AUHQ13825 339 aaKnown RBP14.19□□□□□ -0.14
VPS54-203ENST00000409558 RAB6CQ53S08 254 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 GLRA4Q5JXX5 417 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 CD302Q8IX05 232 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 TMC2Q8TDI7 906 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 CDHR1Q96JP9 859 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 RBM15Q96T37 977 aaKnown RBP eCLIP14.19□□□□□ -0.147e-10■■■■□ 20.1
VPS54-203ENST00000409558 RAB6CQ9H0N0 254 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 PORCNQ9H237 461 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 TXNRD2Q9NNW7 524 aa14.19□□□□□ -0.14
VPS54-203ENST00000409558 MRPL42Q9Y6G3 142 aaKnown RBP14.19□□□□□ -0.14
VPS54-203ENST00000409558 GREB1LQ9C091 1923 aaPredicted RBP14.19□□□□□ -0.14
VPS54-203ENST00000409558 UNGP13051 313 aaPredicted RBP14.18□□□□□ -0.14
VPS54-203ENST00000409558 PSMA2P25787 234 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 LAMTOR4Q0VGL1 99 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms