RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 JAK1P23458 1154 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 LSP1P33241 339 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 GCLMP48507 274 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 SCNN1DP51172 638 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 COPAP53621 1224 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 DYNLL1P63167 89 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 HDLBPQ00341 1268 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 DSG1Q02413 1049 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L24Q0WX57 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 PDAP1Q13442 181 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 FAM98CQ17RN3 349 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 FAM83EQ2M2I3 478 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 TRMT5Q32P41 509 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 SV2CQ496J9 727 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 PID1Q7Z2X4 250 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 CROCCP3Q8IVE0 287 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 E2F7Q96AV8 911 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 VPS33AQ96AX1 596 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 FAM167BQ9BTA0 163 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 ISCA1Q9BUE6 129 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 PHF20Q9BVI0 1012 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 FIS1Q9Y3D6 152 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 NEU2Q9Y3R4 380 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 NDUFB9Q9Y6M9 179 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 TCP11X1B4DZS4 312 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L8P0C7I0 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 MAPTP10636 758 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 CHN1P15882 459 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 HK2P52789 917 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 MAD2L1Q13257 205 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 PTGISQ16647 500 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 E4F1Q66K89 784 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 TIGD7Q6NT04 549 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 NFRKBQ6P4R8 1299 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 LONP2Q86WA8 852 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 TRPC4APQ8TEL6 797 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 EIF2AK1Q9BQI3 630 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 POLR3FQ9H1D9 316 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 EFCAB1Q9HAE3 211 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 DCP1AQ9NPI6 582 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 PRMT7Q9NVM4 692 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 TJP2Q9UDY2 1190 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 RABGEF1Q9UJ41 708 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 EIF3LQ9Y262 564 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 ALDH1A1P00352 501 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 HLA-DPA1P20036 260 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 CALB2P22676 271 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 FMO5P49326 533 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 ITGA1P56199 1179 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 DMC1Q14565 340 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 TRIM71Q2Q1W2 868 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 DCAF4L1Q3SXM0 396 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 SLC44A4Q53GD3 710 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 AGAP9Q5VTM2 703 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 IKBIPQ70UQ0 350 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 DDIASQ8IXT1 998 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 GRAMD1CQ8IYS0 662 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 STKLD1Q8NE28 680 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 HIC2Q96JB3 615 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 NR1H4Q96RI1 486 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 CXorf56Q9H5V9 222 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 CASS4Q9NQ75 786 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 SLC30A1Q9Y6M5 507 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 TRPM1Q7Z4N2 1603 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 RRN3P2A6NIE6 340 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 H0Y3Z8 333 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 LSM8O95777 96 aaKnown RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 SLC25A27O95847 323 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 RBP1P09455 135 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 NUP62P37198 522 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CCT8P50990 548 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 RAD23AP54725 363 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 NSUN2Q08J23 767 aaKnown RBP eCLIP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 TXNRD1Q16881 649 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 ZBTB41Q5SVQ8 909 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 PKN3Q6P5Z2 889 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 JAMLQ86YT9 394 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 SLC22A9Q8IVM8 553 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 MAGEB10Q96LZ2 347 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CCT7Q99832 543 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 FAM213AQ9BRX8 229 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 ASCC2Q9H1I8 757 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 PABPC3Q9H361 631 aaKnown RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 RAD21L1Q9H4I0 556 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 ZNF408Q9H9D4 720 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 FANCEQ9HB96 536 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 UBA2Q9UBT2 640 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 VTI1BQ9UEU0 232 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 ZBTB1Q9Y2K1 713 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 AAR2Q9Y312 384 aaKnown RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 EMSYQ7Z589 1322 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 HECW2Q9P2P5 1572 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 MAGEA4P43358 317 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CLK1P49759 484 aaKnown RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CCZ1BP86790 482 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CCZ1P86791 482 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-203ENST00000409050 MFSD14CQ5VZR4 134 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CYP4Z1Q86W10 505 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 CLEC4FQ8N1N0 589 aa6.37□□□□□ -1.39
SCN1A-203ENST00000409050 ATPAF2Q8N5M1 289 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms